RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 PAX9P55771 341 aa12.98□□□□□ -0.33
TPM3-220ENST00000509601 GDF5OSQ5U4N7 250 aa12.98□□□□□ -0.33
TPM3-220ENST00000509601 COQ8AQ8NI60 647 aa12.98□□□□□ -0.33
TPM3-220ENST00000509601 C17orf77Q96MU5 243 aa12.98□□□□□ -0.33
TPM3-220ENST00000509601 C7orf50Q9BRJ6 194 aaKnown RBP12.98□□□□□ -0.33
TPM3-220ENST00000509601 MFFQ9GZY8 342 aa12.98□□□□□ -0.33
TPM3-220ENST00000509601 FBXL17Q9UF56 701 aa12.98□□□□□ -0.33
TPM3-220ENST00000509601 STRAPQ9Y3F4 350 aaKnown RBP12.98□□□□□ -0.33
TPM3-220ENST00000509601 ELOA3CA0A087WX78 387 aaPredicted RBP12.97□□□□□ -0.33
TPM3-220ENST00000509601 CFDP00746 253 aaPredicted RBP12.97□□□□□ -0.33
TPM3-220ENST00000509601 HLA-DRB4P13762 266 aa12.97□□□□□ -0.33
TPM3-220ENST00000509601 MIFP14174 115 aa12.97□□□□□ -0.33
TPM3-220ENST00000509601 HLA-DRB4X5D2U9 266 aa12.97□□□□□ -0.33
TPM3-220ENST00000509601 CENPXA8MT69 81 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 OR8I2Q8N0Y5 310 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 SMIM8Q96KF7 97 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 LINC00052Q96N35 136 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 HRH4Q9H3N8 390 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 PSENENQ9NZ42 101 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 XCL2Q9UBD3 114 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 TBC1D24Q9ULP9 559 aa12.96□□□□□ -0.33
TPM3-220ENST00000509601 IFNA21P01568 189 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 ID1P41134 155 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 C4orf46Q504U0 113 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 ACOT7LQ6ZUV0 252 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 TMEM144Q7Z5S9 345 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 PPP1R14BQ96C90 147 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 SAV1Q9H4B6 383 aaPredicted RBP12.95□□□□□ -0.34
TPM3-220ENST00000509601 NDUFA13Q9P0J0 144 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 SLC45A2Q9UMX9 530 aa12.95□□□□□ -0.34
TPM3-220ENST00000509601 ZNF98A6NK75 572 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 CCNKO75909 580 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 PSMB3P49720 205 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 NUTF2P61970 127 aaKnown RBP12.94□□□□□ -0.34
TPM3-220ENST00000509601 CNPY1Q3B7I2 92 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 TMEM14EPQ6UXP3 125 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 BPIFCQ8NFQ6 507 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 MITD1Q8WV92 249 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 SLC25A32Q9H2D1 315 aa12.94□□□□□ -0.34
TPM3-220ENST00000509601 ORM2P19652 201 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 HLA-DMBP28068 263 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 LGALS9CQ6DKI2 356 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 FOXI2Q6ZQN5 318 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 C2CD4CQ8TF44 421 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 C20orf173Q96LM9 149 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 CLUHP3Q96NS8 147 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 RSG1Q9BU20 258 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 C1QTNF4Q9BXJ3 329 aa12.93□□□□□ -0.34
TPM3-220ENST00000509601 ISLRO14498 428 aa12.92□□□□□ -0.34
TPM3-220ENST00000509601 SSSCA1O60232 199 aa12.92□□□□□ -0.34
TPM3-220ENST00000509601 IGKV3-20P01619 116 aa12.92□□□□□ -0.34
TPM3-220ENST00000509601 AKR1C1Q04828 323 aa12.92□□□□□ -0.34
TPM3-220ENST00000509601 IAH1Q2TAA2 248 aaPredicted RBP12.92□□□□□ -0.34
TPM3-220ENST00000509601 ZNF705AQ6ZN79 300 aaPredicted RBP12.92□□□□□ -0.34
TPM3-220ENST00000509601 ZBTB8BQ8NAP8 495 aaPredicted RBP12.92□□□□□ -0.34
TPM3-220ENST00000509601 F6UB75 175 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 LYRM1O43325 122 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 FXYD7P58549 80 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 CYP2G1PQ6ZSU1 146 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 RPP25LQ8N5L8 163 aaKnown RBP12.91□□□□□ -0.34
TPM3-220ENST00000509601 ZNF709Q8N972 641 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 OR1B1Q8NGR6 318 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 SLC25A22Q9H936 323 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 APLNQ9ULZ1 77 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 DNAH2Q9P225 4427 aa12.91□□□□□ -0.34
TPM3-220ENST00000509601 C11orf94C9JXX5 98 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 TCRBP04435 133 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 METTL15P1P0C7V9 234 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 GALR1P47211 349 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 TAS2R30P59541 319 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 PLP1P60201 277 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 ARL16Q0P5N6 197 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 Q6ZTC4 211 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 NEU1Q99519 415 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 TMEM147Q9BVK8 224 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 C20orf85Q9H1P6 137 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 NPVFQ9HCQ7 196 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 GSKIPQ9P0R6 139 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 CELA1Q9UNI1 258 aa12.9□□□□□ -0.34
TPM3-220ENST00000509601 RCL1Q9Y2P8 373 aaKnown RBP12.9□□□□□ -0.34
TPM3-220ENST00000509601 A0A0J9YX75 114 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 SMCO3A2RU48 225 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 SCGB1D2O95969 90 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 MBPP02686 304 aaPredicted RBP12.89□□□□□ -0.35
TPM3-220ENST00000509601 IL5P05113 134 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 MEOX2P50222 304 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 TCTAP57738 103 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 RRAS2P62070 204 aaPredicted RBP12.89□□□□□ -0.35
TPM3-220ENST00000509601 DLK1P80370 383 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 C12orf74Q32Q52 190 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 FAM78BQ5VT40 261 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 SPATA31B1PQ5VZV4 182 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 OR4B1Q8NGF8 309 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 C16orf92Q96LL3 132 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 SLC25A39Q9BZJ4 359 aaPredicted RBP12.89□□□□□ -0.35
TPM3-220ENST00000509601 SLC35B3Q9H1N7 401 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 DOK5Q9P104 306 aa12.89□□□□□ -0.35
TPM3-220ENST00000509601 DNAH17Q9UFH2 4485 aa12.88□□□□□ -0.35
TPM3-220ENST00000509601 TRAV8-2A0A0B4J237 113 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms