RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 GAGE1Q13065 139 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 C1orf194Q5T5A4 169 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 SIGLECL1Q8N7X8 197 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 ZNF580Q9UK33 172 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 ZNF90Q03938 601 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 DYNAPQ8N1N2 210 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 FMC1Q96HJ9 113 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 FNDC4Q9H6D8 234 aaPredicted RBP6.61□□□□□ -1.35
USP54-215ENST00000497106 IGF1P05019 195 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 ERVFC1-1P60608 527 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 Q6YL49 198 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 PARLQ9H300 379 aa6.61□□□□□ -1.35
USP54-215ENST00000497106 C7orf77A4D0Y5 90 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 IGHV4-59P01825 116 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 ZNF25P17030 456 aaPredicted RBP6.6□□□□□ -1.35
USP54-215ENST00000497106 IER3P46695 156 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 FOXE3Q13461 319 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 TMEM88Q6PEY1 159 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 BAGE2Q86Y30 109 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 OR10G8Q8NGN5 311 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 DYNLRB2Q8TF09 96 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 PEF1Q9UBV8 284 aaKnown RBP6.6□□□□□ -1.35
USP54-215ENST00000497106 LY96Q9Y6Y9 160 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 CHD8Q9HCK8 2581 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 A0A087WWC5 75 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 K7EIM0 57 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 NDUFA4O00483 81 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 HOXA3O43365 443 aaPredicted RBP6.6□□□□□ -1.35
USP54-215ENST00000497106 NDUFB4O95168 129 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 IGHV3-23P01764 117 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 KIAA0141Q14154 515 aaPredicted RBP6.6□□□□□ -1.35
USP54-215ENST00000497106 GCSAMLQ5JQS6 135 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 KLF17Q5JT82 389 aaPredicted RBP6.6□□□□□ -1.35
USP54-215ENST00000497106 SEPSECSQ9HD40 501 aaKnown RBP6.6□□□□□ -1.35
USP54-215ENST00000497106 PPP5D1E7EU14 171 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 PEX7O00628 323 aa6.6□□□□□ -1.35
USP54-215ENST00000497106 H3BRN7 92 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 ZNF502Q8TBZ5 544 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 C16orf92Q96LL3 132 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 ATG101Q9BSB4 218 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 MDKP21741 143 aaPredicted RBP6.59□□□□□ -1.35
USP54-215ENST00000497106 CRIP2P52943 208 aaPredicted RBP6.59□□□□□ -1.35
USP54-215ENST00000497106 CCL20P78556 96 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 SRSF1Q07955 248 aaKnown RBP eCLIP6.59□□□□□ -1.35
USP54-215ENST00000497106 Q9H3A6 140 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 TMEM160Q9NX00 188 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 A0A1W2PPQ1 181 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 C9JCJ5 164 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 CD99P14209 185 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 KRTAP10-9P60411 292 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 MLANAQ16655 118 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 WFDC11Q8NEX6 87 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 TMEM170AQ8WVE7 144 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 SMIM12Q96EX1 92 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 NOL4LQ96MY1 436 aaPredicted RBP6.59□□□□□ -1.35
USP54-215ENST00000497106 HSPB9Q9BQS6 159 aa6.59□□□□□ -1.35
USP54-215ENST00000497106 G3V318 75 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 CBLN2Q8IUK8 224 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 ZNF331Q9NQX6 463 aaPredicted RBP6.58□□□□□ -1.36
USP54-215ENST00000497106 S4R3C0 116 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 BRI3O95415 125 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 CRYBB3P26998 211 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 ZNF726P1Q15940 193 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 OR10J6PQ8NGY7 276 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 ZNF705GA8MUZ8 300 aaPredicted RBP6.58□□□□□ -1.36
USP54-215ENST00000497106 DLEU1O43261 78 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 RPS10P46783 165 aaKnown RBP6.58□□□□□ -1.36
USP54-215ENST00000497106 RPS20P60866 119 aaKnown RBP6.58□□□□□ -1.36
USP54-215ENST00000497106 TMEM78Q5T7P6 136 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 GBGT1Q8N5D6 347 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 SDF2L1Q9HCN8 221 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 COL6A3P12111 3177 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 TRAV9-1A0A075B6T8 112 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 ATP5G3P48201 142 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 SPATA31B1PQ5VZV4 182 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 EPDR1Q9UM22 224 aa6.58□□□□□ -1.36
USP54-215ENST00000497106 A0A1B0GUS0 222 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 SH2D7A6NKC9 451 aaPredicted RBP6.57□□□□□ -1.36
USP54-215ENST00000497106 IGHV3-11P01762 117 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 SNRPD3P62318 126 aaKnown RBP6.57□□□□□ -1.36
USP54-215ENST00000497106 WDR73Q6P4I2 378 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 FAM208BQ5VWN6 2430 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 E7EUB6 86 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 P01737 135 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 RBPMS2Q6ZRY4 209 aaKnown RBP6.57□□□□□ -1.36
USP54-215ENST00000497106 SLC25A2Q9BXI2 301 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 CMC4P56277 68 aaPredicted RBP6.57□□□□□ -1.36
USP54-215ENST00000497106 NDPQ00604 133 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 SIGLEC15Q6ZMC9 328 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 GSX1Q9H4S2 264 aaPredicted RBP6.57□□□□□ -1.36
USP54-215ENST00000497106 TUBA4BQ9H853 241 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 DAZ1Q9NQZ3 744 aaKnown RBP6.57□□□□□ -1.36
USP54-215ENST00000497106 LINC00527Q9UJ94 153 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 ZNF253O75346 499 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 FANCD2OSQ96PS1 177 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 SCRT1Q9BWW7 348 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 ZFP30Q9Y2G7 519 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 RFNGQ9Y644 331 aa6.57□□□□□ -1.36
USP54-215ENST00000497106 CGB1A6NKQ9 187 aa6.56□□□□□ -1.36
USP54-215ENST00000497106 ZNF491Q8N8L2 437 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms