RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 EIF4E3Q8N5X7 224 aaKnown RBP9.73□□□□□ -0.85
VPS52-220ENST00000493674 SFT2D1Q8WV19 159 aa9.73□□□□□ -0.85
VPS52-220ENST00000493674 HRH4Q9H3N8 390 aa9.73□□□□□ -0.85
VPS52-220ENST00000493674 TECRQ9NZ01 308 aaKnown RBP9.73□□□□□ -0.85
VPS52-220ENST00000493674 DOK5Q9P104 306 aa9.73□□□□□ -0.85
VPS52-220ENST00000493674 PEF1Q9UBV8 284 aaKnown RBP9.73□□□□□ -0.85
VPS52-220ENST00000493674 HIGD1AQ9Y241 93 aa9.73□□□□□ -0.85
VPS52-220ENST00000493674 PUS1Q9Y606 427 aaKnown RBP eCLIP9.73□□□□□ -0.85
VPS52-220ENST00000493674 TENM1Q9UKZ4 2725 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 WNK1Q9H4A3 2382 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 A0A1W2PPV4 95 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 NDUFA4O00483 81 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 EIF3GO75821 320 aaKnown RBP eCLIP9.72□□□□□ -0.85
VPS52-220ENST00000493674 ORM2P19652 201 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 LINC00305Q7Z4B0 112 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 OR1B1Q8NGR6 318 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 SUN5Q8TC36 379 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 ZNF503Q96F45 646 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 UHRF2Q96PU4 802 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 SHANK2-AS3Q9BTD1 123 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 SLC25A2Q9BXI2 301 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 RNF114Q9Y508 228 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 STAB1Q9NY15 2570 aa9.72□□□□□ -0.85
VPS52-220ENST00000493674 RAB19A4D1S5 217 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 TEX46H3BTG2 121 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 HMGB3O15347 200 aaKnown RBP9.71□□□□□ -0.86
VPS52-220ENST00000493674 GGCTO75223 188 aaKnown RBP9.71□□□□□ -0.86
VPS52-220ENST00000493674 ARL14EPLP0DKL9 152 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 C8orf88P0DMB2 117 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 FGF8P55075 233 aaPredicted RBP9.71□□□□□ -0.86
VPS52-220ENST00000493674 SRSF2Q01130 221 aaKnown RBP9.71□□□□□ -0.86
VPS52-220ENST00000493674 KHDC3LQ587J8 217 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 COMMD7Q86VX2 200 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 C4orf3Q8WVX3 66 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 TMEM190Q8WZ59 177 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 MARC2Q969Z3 335 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 SLC25A39Q9BZJ4 359 aaPredicted RBP9.71□□□□□ -0.86
VPS52-220ENST00000493674 PFDN2Q9UHV9 154 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 U3KQE9 123 aa9.71□□□□□ -0.86
VPS52-220ENST00000493674 A0A1B0GUS0 222 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 ANKRD34BA5PLL1 514 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 MRPS12O15235 138 aaKnown RBP9.7□□□□□ -0.86
VPS52-220ENST00000493674 CXorf1O96002 111 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 GP9P14770 177 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 TAS2R45P59539 299 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 KRTAP24-1Q3LI83 254 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 PQLC2Q6ZP29 291 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 GPHB5Q86YW7 130 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 SLC7A5P1Q8MH63 180 aa9.7□□□□□ -0.86
VPS52-220ENST00000493674 TRAV5A0A0B4J249 113 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 IGHV3-35A0A0C4DH35 117 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 HSPB1P04792 205 aaKnown RBP9.69□□□□□ -0.86
VPS52-220ENST00000493674 CD28P10747 220 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 CRYBB3P26998 211 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 GCHFRP30047 84 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 PSMB3P49720 205 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 UNQ9165/PRO28630Q6UXU0 137 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 C18orf65Q6ZTR6 163 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 REC114Q7Z4M0 266 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 SPATA3Q8NHX4 192 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 OR5B12Q96R08 314 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 PBDC1Q9BVG4 233 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 TMPRSS5Q9H3S3 457 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 TMEM14CQ9P0S9 112 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 RABAC1Q9UI14 185 aa9.69□□□□□ -0.86
VPS52-220ENST00000493674 IGHV4OR15-8A0A075B7B6 117 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 A0A087WW49 117 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 LOC102723971A0A1B0GUV8 181 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 A0A1B0GV50 99 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 ZNF98A6NK75 572 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 ADARB2-AS1A8MUL3 147 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 A8MWP6 167 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 NDUFS6O75380 124 aaKnown RBP9.68□□□□□ -0.86
VPS52-220ENST00000493674 CD5P06127 495 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 KRTAP10-3P60369 221 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 ZNF506Q5JVG8 444 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 S100A7AQ86SG5 101 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.68□□□□□ -0.86
VPS52-220ENST00000493674 STXBP6Q8NFX7 210 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 FXYD5Q96DB9 178 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 ARL2-SNX15V9GYD0 113 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 DNHD1Q96M86 4753 aa9.68□□□□□ -0.86
VPS52-220ENST00000493674 K7EMT4 169 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 LGALS9O00182 355 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 BCL2P10415 239 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 PPT1P50897 306 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 FHL3Q13643 280 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 GUK1Q16774 197 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 UQCC3Q6UW78 93 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 MDFIQ99750 246 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 CITED2Q99967 270 aaPredicted RBP9.67□□□□□ -0.86
VPS52-220ENST00000493674 MANBALQ9NQG1 85 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 TMEM167BQ9NRX6 74 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 RNF24Q9Y225 148 aa9.67□□□□□ -0.86
VPS52-220ENST00000493674 TSSC4Q9Y5U2 329 aaPredicted RBP9.67□□□□□ -0.86
VPS52-220ENST00000493674 IGHV3OR16-8A0A075B7F1 116 aa9.66□□□□□ -0.86
VPS52-220ENST00000493674 RBFOX3A6NFN3 312 aa9.66□□□□□ -0.86
VPS52-220ENST00000493674 BUB3O43684 328 aa9.66□□□□□ -0.86
VPS52-220ENST00000493674 OR7C2O60412 319 aa9.66□□□□□ -0.86
VPS52-220ENST00000493674 IGLC2P0DOY2 106 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms