RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 POLR2GP62487 172 aaKnown RBP eCLIP7.78□□□□□ -1.16
COL6A3-214ENST00000493608 C4orf46Q504U0 113 aa7.78□□□□□ -1.16
COL6A3-214ENST00000493608 TRPT1Q86TN4 253 aaKnown RBP7.78□□□□□ -1.16
COL6A3-214ENST00000493608 GATAD1Q8WUU5 269 aa7.78□□□□□ -1.16
COL6A3-214ENST00000493608 RAB40CQ96S21 281 aa7.78□□□□□ -1.16
COL6A3-214ENST00000493608 CLEC5AQ9NY25 188 aa7.78□□□□□ -1.16
COL6A3-214ENST00000493608 RYR2Q92736 4967 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 SNRPGP15A8MWD9 76 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 PLA2G10O15496 165 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 C4BPBP20851 252 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 GATA2P23769 480 aaPredicted RBP7.77□□□□□ -1.17
COL6A3-214ENST00000493608 DEFB1P60022 68 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 NANOS2P60321 138 aaKnown RBP7.77□□□□□ -1.17
COL6A3-214ENST00000493608 RPP30P78346 268 aaKnown RBP7.77□□□□□ -1.17
COL6A3-214ENST00000493608 PLECQ15149 4684 aaKnown RBP7.77□□□□□ -1.17
COL6A3-214ENST00000493608 COQ8AQ8NI60 647 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 PPP1R14BQ96C90 147 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 CIB3Q96Q77 187 aaPredicted RBP7.77□□□□□ -1.17
COL6A3-214ENST00000493608 TRGV9Q99603 122 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 NRN1Q9NPD7 142 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 PSENENQ9NZ42 101 aa7.77□□□□□ -1.17
COL6A3-214ENST00000493608 DNAH1Q9P2D7 4330 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 PRSS46E5RG02 174 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 SSSCA1O60232 199 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 CCNKO75909 580 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 IFNA21P01568 189 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 NKX2-1P43699 371 aaPredicted RBP7.76□□□□□ -1.17
COL6A3-214ENST00000493608 LINC00310P59036 64 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 OR8G2PQ6IF36 304 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 CEMP1Q6PRD7 247 aaPredicted RBP7.76□□□□□ -1.17
COL6A3-214ENST00000493608 TMEM182Q6ZP80 229 aaPredicted RBP7.76□□□□□ -1.17
COL6A3-214ENST00000493608 THAP8Q8NA92 274 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 OR4D5Q8NGN0 318 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 PHLDA1Q8WV24 401 aaPredicted RBP7.76□□□□□ -1.17
COL6A3-214ENST00000493608 C7orf50Q9BRJ6 194 aaKnown RBP7.76□□□□□ -1.17
COL6A3-214ENST00000493608 NDUFA13Q9P0J0 144 aa7.76□□□□□ -1.17
COL6A3-214ENST00000493608 STRAPQ9Y3F4 350 aaKnown RBP7.76□□□□□ -1.17
COL6A3-214ENST00000493608 HYDINQ4G0P3 5121 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 SMCO3A2RU48 225 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 LY6G6CO95867 125 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 SCGB1D2O95969 90 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 IGKV3-20P01619 116 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 FABP1P07148 127 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 SNRPD3P62318 126 aaKnown RBP7.75□□□□□ -1.17
COL6A3-214ENST00000493608 AKR1C1Q04828 323 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 TMEM217Q8N7C4 229 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 LINC00052Q96N35 136 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 KRTAP4-2Q9BYR5 136 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 WDR12Q9GZL7 423 aaKnown RBP7.75□□□□□ -1.17
COL6A3-214ENST00000493608 GSKIPQ9P0R6 139 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 FBXL17Q9UF56 701 aa7.75□□□□□ -1.17
COL6A3-214ENST00000493608 TRAV6A0A075B6T7 132 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 NUPR2A6NF83 97 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 CCSO14618 274 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 LYRM1O43325 122 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 RBMY1A1P0DJD3 496 aaKnown RBP7.74□□□□□ -1.17
COL6A3-214ENST00000493608 RBMY1CP0DJD4 496 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 SPP1P10451 314 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 ORM2P19652 201 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 PAX9P55771 341 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 FXYD7P58549 80 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 RRAS2P62070 204 aaPredicted RBP7.74□□□□□ -1.17
COL6A3-214ENST00000493608 RBMY1FQ15415 496 aaKnown RBP7.74□□□□□ -1.17
COL6A3-214ENST00000493608 IAH1Q2TAA2 248 aaPredicted RBP7.74□□□□□ -1.17
COL6A3-214ENST00000493608 GDF5OSQ5U4N7 250 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 ACOT7LQ6ZUV0 252 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 OR8I2Q8N0Y5 310 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 C11orf45Q8TAV5 145 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 C20orf85Q9H1P6 137 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 SLC25A22Q9H936 323 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 PFDN2Q9UHV9 154 aa7.74□□□□□ -1.17
COL6A3-214ENST00000493608 ALMS1Q8TCU4 4167 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 IGHV4-28A0A0C4DH34 117 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 PMS2P5A8MQ11 134 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 H3BMM0 161 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 TCRBP04435 133 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 METTL15P1P0C7V9 234 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 ATF4P18848 351 aaPredicted RBP7.73□□□□□ -1.17
COL6A3-214ENST00000493608 C1orf194Q5T5A4 169 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 MORN3Q6PF18 240 aaPredicted RBP7.73□□□□□ -1.17
COL6A3-214ENST00000493608 ZBTB8BQ8NAP8 495 aaPredicted RBP7.73□□□□□ -1.17
COL6A3-214ENST00000493608 Q8NAQ8 132 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 CSNK1G2-AS1Q8NCQ2 148 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 BPIFCQ8NFQ6 507 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 OR1B1Q8NGR6 318 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 MITD1Q8WV92 249 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 SMIM8Q96KF7 97 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 SEC22CQ9BRL7 303 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 SLC25A32Q9H2D1 315 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 DOK5Q9P104 306 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 XCL2Q9UBD3 114 aa7.73□□□□□ -1.17
COL6A3-214ENST00000493608 KLK5Q9Y337 293 aaPredicted RBP7.73□□□□□ -1.17
COL6A3-214ENST00000493608 ZNF98A6NK75 572 aa7.72□□□□□ -1.17
COL6A3-214ENST00000493608 FAM25EA8MYX2 175 aa7.72□□□□□ -1.17
COL6A3-214ENST00000493608 F6UB75 175 aa7.72□□□□□ -1.17
COL6A3-214ENST00000493608 IL5P05113 134 aa7.72□□□□□ -1.17
COL6A3-214ENST00000493608 NUP62P37198 522 aaPredicted RBP7.72□□□□□ -1.17
COL6A3-214ENST00000493608 ID1P41134 155 aa7.72□□□□□ -1.17
COL6A3-214ENST00000493608 CYP2G1PQ6ZSU1 146 aa7.72□□□□□ -1.17
COL6A3-214ENST00000493608 TMEM144Q7Z5S9 345 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms