RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 OR2D3Q8NGH3 330 aa14.29□□□□□ -0.12
VIM-206ENST00000487938 RPEQ96AT9 228 aa14.29□□□□□ -0.12
VIM-206ENST00000487938 MLST8Q9BVC4 326 aa14.29□□□□□ -0.12
VIM-206ENST00000487938 RBP4P02753 201 aa14.29□□□□□ -0.12
VIM-206ENST00000487938 CD24P25063 80 aa14.29□□□□□ -0.12
VIM-206ENST00000487938 SRSF12Q8WXF0 261 aaKnown RBP14.29□□□□□ -0.12
VIM-206ENST00000487938 BORCS7Q96B45 105 aa14.29□□□□□ -0.12
VIM-206ENST00000487938 HIGD1AQ9Y241 93 aa14.29□□□□□ -0.12
VIM-206ENST00000487938 TPRP12270 2363 aaKnown RBP14.28□□□□□ -0.12
VIM-206ENST00000487938 TCRAP04437 139 aa14.28□□□□□ -0.12
VIM-206ENST00000487938 GRNP28799 593 aaKnown RBP14.28□□□□□ -0.12
VIM-206ENST00000487938 BATFQ16520 125 aa14.28□□□□□ -0.12
VIM-206ENST00000487938 SPATA45Q537H7 98 aa14.28□□□□□ -0.12
VIM-206ENST00000487938 C5orf17Q8NAS9 161 aa14.28□□□□□ -0.12
VIM-206ENST00000487938 ALKBH7Q9BT30 221 aaPredicted RBP14.28□□□□□ -0.12
VIM-206ENST00000487938 DCHS2Q6V1P9 2916 aa14.28□□□□□ -0.12
VIM-206ENST00000487938 TRAV8-1A0A0A6YYK1 113 aa14.27□□□□□ -0.12
VIM-206ENST00000487938 A6NNC1 897 aa14.27□□□□□ -0.12
VIM-206ENST00000487938 TOMM40O96008 361 aa14.27□□□□□ -0.12
VIM-206ENST00000487938 ATOH7Q8N100 152 aa14.27□□□□□ -0.12
VIM-206ENST00000487938 MUC15Q8N387 334 aa14.27□□□□□ -0.12
VIM-206ENST00000487938 OR4B1Q8NGF8 309 aa14.27□□□□□ -0.12
VIM-206ENST00000487938 ONECUT1Q9UBC0 465 aa14.27□□□□□ -0.12
VIM-206ENST00000487938 FAM90A27PA6NNH2 459 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 LY6HO94772 140 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 IGLC1P0CG04 106 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 LCN12Q6JVE5 192 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 EXOC3-AS1Q8N2X6 119 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 GTSF1Q8WW33 167 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 PGLYRP4Q96LB8 373 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 RPP21Q9H633 154 aaKnown RBP14.27□□□□□ -0.13
VIM-206ENST00000487938 MRPL27Q9P0M9 148 aaKnown RBP14.27□□□□□ -0.13
VIM-206ENST00000487938 CSMD1Q96PZ7 3565 aa14.27□□□□□ -0.13
VIM-206ENST00000487938 HSBP1O75506 76 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 LTAP01374 205 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 P01737 135 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 PLP1P60201 277 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 RBPJQ06330 500 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 LDLRAD2Q5SZI1 272 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 RNASEKQ6P5S7 137 aaKnown RBP14.26□□□□□ -0.13
VIM-206ENST00000487938 Q71RC1 249 aaPredicted RBP14.26□□□□□ -0.13
VIM-206ENST00000487938 FMC1Q96HJ9 113 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 SLC25A39Q9BZJ4 359 aaPredicted RBP14.26□□□□□ -0.13
VIM-206ENST00000487938 I3L2K1 104 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 CNIH1O95406 144 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 CTRLP40313 264 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 VKORC1Q9BQB6 163 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 PRSS22Q9GZN4 317 aa14.26□□□□□ -0.13
VIM-206ENST00000487938 A0A1B0GXF2 115 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 M0QZK8 103 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 CA7P43166 264 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 CIARTQ8N365 385 aaPredicted RBP14.25□□□□□ -0.13
VIM-206ENST00000487938 DAZAP1Q96EP5 407 aaKnown RBP14.25□□□□□ -0.13
VIM-206ENST00000487938 RASL11BQ9BPW5 248 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 ARHGAP32A7KAX9 2087 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 M0R2Z0 102 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 SIAH2O43255 324 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 ZNF25P17030 456 aaPredicted RBP14.25□□□□□ -0.13
VIM-206ENST00000487938 KLF5Q13887 457 aaPredicted RBP14.25□□□□□ -0.13
VIM-206ENST00000487938 MAJINQ3KP22 176 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 ASCL2Q99929 193 aa14.25□□□□□ -0.13
VIM-206ENST00000487938 C19orf71A6NCJ1 209 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 A8MWL6 223 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 TIMM23O14925 209 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 OR2J3O76001 311 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 ZNF672Q499Z4 452 aaPredicted RBP14.24□□□□□ -0.13
VIM-206ENST00000487938 PRNTQ86SH4 94 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 SMIM12Q96EX1 92 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 HILPDAQ9Y5L2 63 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 LY6LH3BQJ8 138 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 RPLP1P05386 114 aaKnown RBP14.24□□□□□ -0.13
VIM-206ENST00000487938 FOXA3P55318 350 aaPredicted RBP14.24□□□□□ -0.13
VIM-206ENST00000487938 HBBP68871 147 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 ATP5L2Q7Z4Y8 100 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 C17orf77Q96MU5 243 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 S4R3C0 116 aa14.24□□□□□ -0.13
VIM-206ENST00000487938 M0QZ24 198 aa14.23□□□□□ -0.13
VIM-206ENST00000487938 IGKV1-17P01599 117 aa14.23□□□□□ -0.13
VIM-206ENST00000487938 ARF6P62330 175 aa14.23□□□□□ -0.13
VIM-206ENST00000487938 MMDQ15546 238 aa14.23□□□□□ -0.13
VIM-206ENST00000487938 EBLN2Q6P2I7 272 aa14.23□□□□□ -0.13
VIM-206ENST00000487938 GOLT1AQ6ZVE7 132 aa14.23□□□□□ -0.13
VIM-206ENST00000487938 OTORQ9NRC9 128 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 A0A1W2PRD5 423 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 A0A1W2PRF3 423 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 A0A1W2PRM7 423 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 FAM181BA6NEQ2 426 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 PAX2Q02962 417 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 PMCHL1Q16048 86 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 KLF17Q5JT82 389 aaPredicted RBP14.22□□□□□ -0.13
VIM-206ENST00000487938 URB1-AS1Q96HZ7 61 aa14.22□□□□□ -0.13
VIM-206ENST00000487938 SH2D7A6NKC9 451 aaPredicted RBP14.21□□□□□ -0.13
VIM-206ENST00000487938 KIR3DL3Q8N743 410 aa14.21□□□□□ -0.13
VIM-206ENST00000487938 OR8B3Q8NGG8 313 aa14.21□□□□□ -0.13
VIM-206ENST00000487938 OR8B2Q96RD0 313 aa14.21□□□□□ -0.13
VIM-206ENST00000487938 ZNF492Q9P255 531 aa14.21□□□□□ -0.13
VIM-206ENST00000487938 CEP295Q9C0D2 2601 aa14.21□□□□□ -0.13
VIM-206ENST00000487938 ABCA4P78363 2273 aa14.21□□□□□ -0.13
VIM-206ENST00000487938 TLN1Q9Y490 2541 aaKnown RBP14.21□□□□□ -0.13
VIM-206ENST00000487938 K7EIM0 57 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms