RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 KCNS1Q96KK3 526 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 YPEL4Q96NS1 127 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 TIMM17AQ99595 171 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 HSD17B10Q99714 261 aaKnown RBP1.8□□□□□ -2.12
VPS41-213ENST00000485955 ZNF649Q9BS31 505 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 PDCD10Q9BUL8 212 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 COMMD5Q9GZQ3 224 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 PARP12Q9H0J9 701 aaKnown RBP1.8□□□□□ -2.12
VPS41-213ENST00000485955 LPAR5Q9H1C0 372 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 MED28Q9H204 178 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 OR2D2Q9H210 308 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 LINC00597Q9H2U6 94 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 CACYBPQ9HB71 228 aaKnown RBP1.8□□□□□ -2.12
VPS41-213ENST00000485955 POPDC3Q9HBV1 291 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 GPR84Q9NQS5 396 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 MED11Q9P086 117 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 ERG28Q9UKR5 140 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 COQ4Q9Y3A0 265 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 SVEP1Q4LDE5 3571 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 TMEM131Q92545 1883 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 MYO16Q9Y6X6 1858 aa1.8□□□□□ -2.12
VPS41-213ENST00000485955 SDK1Q7Z5N4 2213 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 MEGF8Q7Z7M0 2845 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 TRAV19A0A0A6YYK7 116 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 IGHV5-51A0A0C4DH38 117 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 A0A1W2PP18 115 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 B4DEV8 164 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 C4orf51C9J302 202 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 NDUFC2-KCTD14E9PQ53 114 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 J3QRK9 145 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 SLC37A4O43826 429 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 GNG7O60262 68 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 DEDDO75618 318 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 OR2H2O95918 312 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 IGLV2-8P01709 118 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 PPIBP23284 216 aaKnown RBP1.79□□□□□ -2.12
VPS41-213ENST00000485955 LPAR6P43657 344 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 EVX1P49640 407 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 MAXP61244 160 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 CAV1Q03135 178 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 SCGB2B2Q4G0G5 96 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 OCIAD2Q56VL3 154 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 DNLZQ5SXM8 178 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 HAGHLQ6PII5 290 aaPredicted RBP1.79□□□□□ -2.12
VPS41-213ENST00000485955 SCIMPQ6UWF3 145 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 UNQ9165/PRO28630Q6UXU0 137 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 Q6ZS49 121 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 BAP18Q8IXM2 172 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 OR8I2Q8N0Y5 310 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 TMEM86AQ8N2M4 240 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 C12orf45Q8N5I9 185 aaPredicted RBP1.79□□□□□ -2.12
VPS41-213ENST00000485955 YIPF7Q8N8F6 280 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 OR4C6Q8NH72 309 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 RTN4IP1Q8WWV3 396 aaPredicted RBP1.79□□□□□ -2.12
VPS41-213ENST00000485955 MS4A6EQ96DS6 147 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 NMNAT3Q96T66 252 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 THTPAQ9BU02 230 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 SMIM3Q9BZL3 60 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 LINC00470Q9BZP3 86 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 GTSF1LQ9H1H1 148 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 CXorf21Q9HAI6 301 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 ZNF355PQ9NSJ1 428 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 TAAR3PQ9P1P4 343 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 MED31Q9Y3C7 131 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 ZNF706Q9Y5V0 76 aaPredicted RBP1.79□□□□□ -2.12
VPS41-213ENST00000485955 KTN1Q86UP2 1357 aaKnown RBP1.79□□□□□ -2.12
VPS41-213ENST00000485955 MED13Q9UHV7 2174 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 SVILO95425 2214 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 TLN2Q9Y4G6 2542 aa1.79□□□□□ -2.12
VPS41-213ENST00000485955 CSPG4Q6UVK1 2322 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 URB1O60287 2271 aaKnown RBP1.78□□□□□ -2.12
VPS41-213ENST00000485955 ASCC3Q8N3C0 2202 aaKnown RBP1.78□□□□□ -2.12
VPS41-213ENST00000485955 YLPM1P49750 1951 aaKnown RBP1.78□□□□□ -2.12
VPS41-213ENST00000485955 HERC2O95714 4834 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 IBTKQ9P2D0 1353 aaPredicted RBP1.78□□□□□ -2.12
VPS41-213ENST00000485955 A0A0J9YY10 115 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 TMEM269A0A1B0GVZ9 245 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 TRDV1A0A1B0GX56 115 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 A0A1B0GX78 115 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 DUXBA0A1W2PPF3 345 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 C9JAW5 83 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 CLDN25C9JDP6 229 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 F6UZH7 168 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 LST1O00453 97 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 GSTZ1O43708 216 aaPredicted RBP1.78□□□□□ -2.12
VPS41-213ENST00000485955 GABARAPO95166 117 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 FSTL3O95633 263 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 CXorf1O96002 111 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 HLA-DPB1P04440 258 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 SMIM17P0DL12 118 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 EVI2AP22794 236 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 KDELR1P24390 212 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 CMPK1P30085 196 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 GABRA3P34903 492 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 RPL35P42766 123 aaKnown RBP1.78□□□□□ -2.12
VPS41-213ENST00000485955 GABRA2P47869 451 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 AKR1D1P51857 326 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 LINC00313P59037 77 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 TAS2R30P59541 319 aa1.78□□□□□ -2.12
VPS41-213ENST00000485955 GABARAPL2P60520 117 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms