RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ATP5IP56385 69 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-204ENST00000475218 DEFB1P60022 68 aa10.23□□□□□ -0.77
UPF3A-204ENST00000475218 SIGLEC15Q6ZMC9 328 aa10.23□□□□□ -0.77
UPF3A-204ENST00000475218 MED28Q9H204 178 aa10.23□□□□□ -0.77
UPF3A-204ENST00000475218 NRN1Q9NPD7 142 aa10.23□□□□□ -0.77
UPF3A-204ENST00000475218 FLVCR2Q9UPI3 526 aa10.23□□□□□ -0.77
UPF3A-204ENST00000475218 LINC00862A6NCI5 91 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 ZNF705EA8MWA4 302 aaPredicted RBP10.22□□□□□ -0.77
UPF3A-204ENST00000475218 LY6G6CO95867 125 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 HOXB5P09067 269 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 SPP1P10451 314 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 BTCP35070 178 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 GGNBP1Q5YKI7 109 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 THAP8Q8NA92 274 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 SUN5Q8TC36 379 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 CLEC5AQ9NY25 188 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 TMED3Q9Y3Q3 217 aa10.22□□□□□ -0.77
UPF3A-204ENST00000475218 IGHV4-28A0A0C4DH34 117 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 ZFP92A6NM28 416 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 SOCS3O14543 225 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 ADAP1O75689 374 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 MORN3Q6PF18 240 aaPredicted RBP10.21□□□□□ -0.77
UPF3A-204ENST00000475218 C11orf45Q8TAV5 145 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 C17orf77Q96MU5 243 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 PBDC1Q9BVG4 233 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 HSPB11Q9Y547 144 aa10.21□□□□□ -0.77
UPF3A-204ENST00000475218 C9orf170A2RU37 121 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 H3BMM0 161 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 NDUFB6O95139 128 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 OR2F1Q13607 317 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 GDF5OSQ5U4N7 250 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 OR8G2PQ6IF36 304 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 TMEM182Q6ZP80 229 aaPredicted RBP10.21□□□□□ -0.78
UPF3A-204ENST00000475218 C9orf62Q8N4C0 152 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 SLC35E1Q96K37 410 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 TRGV9Q99603 122 aa10.21□□□□□ -0.78
UPF3A-204ENST00000475218 SEPSECSQ9HD40 501 aaKnown RBP10.21□□□□□ -0.78
UPF3A-204ENST00000475218 DNAH10Q8IVF4 4471 aa10.2□□□□□ -0.78
UPF3A-204ENST00000475218 ELOA3CA0A087WX78 387 aaPredicted RBP10.2□□□□□ -0.78
UPF3A-204ENST00000475218 WRBO00258 174 aa10.2□□□□□ -0.78
UPF3A-204ENST00000475218 SYNGR2O43760 224 aa10.2□□□□□ -0.78
UPF3A-204ENST00000475218 FBXL17Q9UF56 701 aa10.2□□□□□ -0.78
UPF3A-204ENST00000475218 KLK5Q9Y337 293 aaPredicted RBP10.2□□□□□ -0.78
UPF3A-204ENST00000475218 PIGBOS1A0A0B4J2F0 54 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 PRAF2O60831 178 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 UBE2MP61081 183 aaKnown RBP10.19□□□□□ -0.78
UPF3A-204ENST00000475218 DNAH6Q9C0G6 4158 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 H3BP45 60 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 IFNA7P01567 189 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 LYZP61626 148 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 ID3Q02535 119 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 TMEM41BQ5BJD5 291 aa10.19□□□□□ -0.78
UPF3A-204ENST00000475218 RPP25LQ8N5L8 163 aaKnown RBP10.19□□□□□ -0.78
UPF3A-204ENST00000475218 ZNF431Q8TF32 576 aaPredicted RBP10.19□□□□□ -0.78
UPF3A-204ENST00000475218 NAP1L6A6NFF2 107 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 PMS2P5A8MQ11 134 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 MED6O75586 246 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 HLA-DRB4P13762 266 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 GATA2P23769 480 aaPredicted RBP10.18□□□□□ -0.78
UPF3A-204ENST00000475218 POLR2GP62487 172 aaKnown RBP eCLIP10.18□□□□□ -0.78
UPF3A-204ENST00000475218 RAB11AP62491 216 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 OR4D5Q8NGN0 318 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 MFFQ9GZY8 342 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 HRH4Q9H3N8 390 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 HLA-DRB4X5D2U9 266 aa10.18□□□□□ -0.78
UPF3A-204ENST00000475218 SNRPGP15A8MWD9 76 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 DEDDO75618 318 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 MIFP14174 115 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 ANXA7P20073 488 aaKnown RBP10.17□□□□□ -0.78
UPF3A-204ENST00000475218 NKX2-1P43699 371 aaPredicted RBP10.17□□□□□ -0.78
UPF3A-204ENST00000475218 PAX9P55771 341 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 SNRPD3P62318 126 aaKnown RBP10.17□□□□□ -0.78
UPF3A-204ENST00000475218 SPANXN5Q5MJ07 72 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 C1orf194Q5T5A4 169 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 TEX261Q6UWH6 196 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 CIB3Q96Q77 187 aaPredicted RBP10.17□□□□□ -0.78
UPF3A-204ENST00000475218 CELA1Q9UNI1 258 aa10.17□□□□□ -0.78
UPF3A-204ENST00000475218 TCRBP04435 133 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 OR4E1P0C645 316 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 FCN2Q15485 313 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 CLLU1Q5K131 121 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 ACOT7LQ6ZUV0 252 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 C20orf173Q96LM9 149 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 XCL2Q9UBD3 114 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 NUP62P37198 522 aaPredicted RBP10.16□□□□□ -0.78
UPF3A-204ENST00000475218 PRR20EP86478 221 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 PRR20CP86479 221 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 PRR20DP86480 221 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 PRR20BP86481 221 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 PRR20AP86496 221 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 LGALS9CQ6DKI2 356 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 ZNF709Q8N972 641 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 ZNF680Q8NEM1 530 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 SLC25A32Q9H2D1 315 aa10.16□□□□□ -0.78
UPF3A-204ENST00000475218 SAV1Q9H4B6 383 aaPredicted RBP10.16□□□□□ -0.78
UPF3A-204ENST00000475218 H2AFB2P0C5Z0 115 aa10.15□□□□□ -0.78
UPF3A-204ENST00000475218 HLA-DMBP28068 263 aa10.15□□□□□ -0.78
UPF3A-204ENST00000475218 PSMB3P49720 205 aa10.15□□□□□ -0.78
UPF3A-204ENST00000475218 RAB14P61106 215 aa10.15□□□□□ -0.78
UPF3A-204ENST00000475218 ZNF705AQ6ZN79 300 aaPredicted RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms