RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 RNF24Q9Y225 148 aa13.31□□□□□ -0.28
SMARCD3-206ENST00000470588 WNK2Q9Y3S1 2297 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 PGPA6NDG6 321 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 NDUFB8O95169 186 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 HIST1H1EP10412 219 aaKnown RBP13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 ZNF491Q8N8L2 437 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 FAM110DQ8TAY7 271 aaPredicted RBP13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 BLNKQ8WV28 456 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 SHANK2-AS3Q9BTD1 123 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 MEGF9Q9H1U4 602 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 C7orf69Q9H7B7 122 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 USP9YO00507 2555 aaPredicted RBP13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 ANKRD17O75179 2603 aaKnown RBP13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 SCGB2A1O75556 95 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 IGLV2-8P01709 118 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 S100A8P05109 93 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 S100A9P06702 114 aaKnown RBP13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 ERVFC1-1P60608 527 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 LOXL1Q08397 574 aaPredicted RBP13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 ZNF600Q6ZNG1 722 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 HIF1ANQ9NWT6 349 aa13.3□□□□□ -0.28
SMARCD3-206ENST00000470588 A0A0U1RQK1 487 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 ZNF320A2RRD8 509 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 ISLRO14498 428 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 SLC25A5P05141 298 aaKnown RBP13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 FCGR2BP31994 310 aaPredicted RBP13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 OR5I1Q13606 314 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 VN1R17PQ8TDU5 208 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 HSPB9Q9BQS6 159 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 FBXL7Q9UJT9 491 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 SPG11Q96JI7 2443 aa13.29□□□□□ -0.28
SMARCD3-206ENST00000470588 TRAV40A0A0B4J280 105 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 H3BRN7 92 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 OR2J3O76001 311 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 CDX1P47902 265 aaPredicted RBP13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 TMEM183BQ1AE95 376 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 Q56UQ5 140 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 LEMD1Q68G75 181 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 UNQ5815/PRO19632Q6UWF5 114 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 PRSS57Q6UWY2 283 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 RNF125Q96EQ8 232 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 KLF12Q9Y4X4 402 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 V9GYV3 84 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 MED13LQ71F56 2210 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 ABCA2Q9BZC7 2435 aa13.28□□□□□ -0.28
SMARCD3-206ENST00000470588 BAGE2Q86Y30 109 aa13.27□□□□□ -0.28
SMARCD3-206ENST00000470588 C5orf17Q8NAS9 161 aa13.27□□□□□ -0.28
SMARCD3-206ENST00000470588 RNF223E7ERA6 249 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 F8W735 103 aaPredicted RBP13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 J3QLI3 93 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 IL4P05112 153 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 RPEL1Q2QD12 228 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 BPIFA4PQ86YQ2 179 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 C5orf56Q8N8D9 126 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 LINC00479Q96M42 142 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 TMUB1Q9BVT8 246 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 Q9H3A6 140 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 OTORQ9NRC9 128 aa13.27□□□□□ -0.29
SMARCD3-206ENST00000470588 A0A096LNT2 108 aa13.26□□□□□ -0.29
SMARCD3-206ENST00000470588 SLC17A3O00476 420 aa13.26□□□□□ -0.29
SMARCD3-206ENST00000470588 MGST1P10620 155 aaKnown RBP13.26□□□□□ -0.29
SMARCD3-206ENST00000470588 ACTL10Q5JWF8 245 aa13.26□□□□□ -0.29
SMARCD3-206ENST00000470588 SMIM12Q96EX1 92 aa13.26□□□□□ -0.29
SMARCD3-206ENST00000470588 ZNF586Q9NXT0 402 aa13.26□□□□□ -0.29
SMARCD3-206ENST00000470588 S4R3C0 116 aa13.26□□□□□ -0.29
SMARCD3-206ENST00000470588 ATP6V0E1O15342 81 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 SNRPCP09234 159 aaKnown RBP13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 MEOX2P50222 304 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 RPL15P61313 204 aaKnown RBP13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 OR4F17Q8NGA8 305 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 PIFOQ8TCI5 191 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 ATG101Q9BSB4 218 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 PITPNC1Q9UKF7 332 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 MOB4Q9Y3A3 225 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 DOPEY2Q9Y3R5 2298 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 TENM4Q6N022 2769 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 CRYBG3Q68DQ2 2970 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 TACC2O95359 2948 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 IGHV3OR16-10A0A075B7F0 116 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 ZNF98A6NK75 572 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 UBE2G1P62253 170 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 GNG5P63218 68 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 RPL19P84098 196 aaKnown RBP13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 FAM231DQ6ZW35 169 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 Q96MF0 132 aa13.25□□□□□ -0.29
SMARCD3-206ENST00000470588 ABCA1O95477 2261 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 TRBV9A0A0B4J1U6 114 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 TRAV34A0A0B4J273 112 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 CTSGP08311 255 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 HIST2H2BCQ6DN03 193 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 LYPD1Q8N2G4 141 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 FMC1Q96HJ9 113 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 RNASE7Q9H1E1 156 aaKnown RBP13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 GAR1Q9NY12 217 aaKnown RBP13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 TRAPPC1Q9Y5R8 145 aa13.24□□□□□ -0.29
SMARCD3-206ENST00000470588 TGFAP01135 160 aa13.23□□□□□ -0.29
SMARCD3-206ENST00000470588 S100A7P31151 101 aa13.23□□□□□ -0.29
SMARCD3-206ENST00000470588 ECSCRQ19T08 205 aa13.23□□□□□ -0.29
SMARCD3-206ENST00000470588 IBA57Q5T440 356 aaKnown RBP13.23□□□□□ -0.29
SMARCD3-206ENST00000470588 C12orf57Q99622 126 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms