RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 OR2J3O76001 311 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 NDUFB8O95169 186 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 DEFA4P12838 97 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 PVALBP20472 110 aaPredicted RBP3.65□□□□□ -1.82
SF3B1-208ENST00000470268 ATP6V0CP27449 155 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 RPL23AP62750 156 aaKnown RBP3.65□□□□□ -1.82
SF3B1-208ENST00000470268 CCL20P78556 96 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 FAM74A3Q4VXF1 159 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 OR8G2PQ6IF36 304 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 Q6ZRG5 221 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 KLHDC1Q8N7A1 406 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 UBAC2Q8NBM4 344 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 PINX1Q96BK5 328 aaKnown RBP3.65□□□□□ -1.82
SF3B1-208ENST00000470268 PHYHIPLQ96FC7 376 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 NARS2Q96I59 477 aaKnown RBP3.65□□□□□ -1.82
SF3B1-208ENST00000470268 RSG1Q9BU20 258 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 ARV1Q9H2C2 271 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 ZNF355PQ9NSJ1 428 aa3.65□□□□□ -1.82
SF3B1-208ENST00000470268 IGKV1OR2-108A0A075B7D4 117 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 XKRY2A2RUG3 117 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 CLPSL1A2RUU4 121 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 TAAR5O14804 337 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 NDUFS6O75380 124 aaKnown RBP3.65□□□□□ -1.83
SF3B1-208ENST00000470268 SNAPINO95295 136 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 BRI3O95415 125 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 MT-CO2P00403 227 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 IGHV3-23P01764 117 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 TRGV3P03979 118 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 IFNA4P05014 189 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 FABP1P07148 127 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 SPP1P10451 314 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 SULT1A1P50225 295 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 RAB9AP51151 201 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 RHOGP84095 191 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 ZNF616Q08AN1 781 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 C15orf32Q32M92 178 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 C18orf65Q6ZTR6 163 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 SSX7Q7RTT5 188 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 CENPVQ7Z7K6 275 aaPredicted RBP3.65□□□□□ -1.83
SF3B1-208ENST00000470268 OR5AU1Q8NGC0 362 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 OR4F5Q8NH21 305 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 MYOZ3Q8TDC0 251 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 GINS3Q9BRX5 216 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 MLXQ9UH92 298 aa3.65□□□□□ -1.83
SF3B1-208ENST00000470268 JMJD1CQ15652 2540 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 C2CD3Q4AC94 2353 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 UBE2L5PA0A1B0GUS4 154 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 GATCO43716 136 aaKnown RBP3.64□□□□□ -1.83
SF3B1-208ENST00000470268 TRBV12-3P01733 135 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 IGHV3-11P01762 117 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 APOC3P02656 99 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 OR8U8P0C7N1 319 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 CD28P10747 220 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 OPRK1P41145 380 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 SULT1A2P50226 295 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 SUB1P53999 127 aaKnown RBP eCLIP3.64□□□□□ -1.83
SF3B1-208ENST00000470268 TPPP2P59282 170 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 GAMTQ14353 236 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 GUCA2BQ16661 112 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 SUMO4Q6EEV6 95 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 TEX38Q6PEX7 206 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 BTNL8Q6UX41 500 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 NECAP1Q8NC96 275 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 OR10P1Q8NGE3 313 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 OR2G3Q8NGZ4 309 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 FAM213BQ8TBF2 198 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 RNASEH2CQ8TDP1 164 aaKnown RBP3.64□□□□□ -1.83
SF3B1-208ENST00000470268 ZNF414Q96IQ9 312 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 BIN3Q9NQY0 253 aa3.64□□□□□ -1.83
SF3B1-208ENST00000470268 IGKV1D-37A0A075B6S9 117 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 TMEM89A2RUT3 159 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 RAB19A4D1S5 217 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 H3BUA1 57 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 CORTO00230 105 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 HMGB3O15347 200 aaKnown RBP3.63□□□□□ -1.83
SF3B1-208ENST00000470268 ELLP55199 621 aaPredicted RBP3.63□□□□□ -1.83
SF3B1-208ENST00000470268 ATP5IP56385 69 aaPredicted RBP3.63□□□□□ -1.83
SF3B1-208ENST00000470268 RAB11AP62491 216 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 SLC35B1P78383 322 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 BAXQ07812 192 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 SLC38A11Q08AI6 406 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 VWC2Q2TAL6 325 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 KRTAP15-1Q3LI76 137 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 AWAT1Q58HT5 328 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 SLC16A13Q7RTY0 426 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 ZNF491Q8N8L2 437 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 OR1L6Q8NGR2 347 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 ZNF502Q8TBZ5 544 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 OR5B12Q96R08 314 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 ATP5SQ99766 215 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 CITED2Q99967 270 aaPredicted RBP3.63□□□□□ -1.83
SF3B1-208ENST00000470268 RARRES2Q99969 163 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 C19orf24Q9BVV8 132 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 SLC25A31Q9H0C2 315 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 GNB4Q9HAV0 340 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 GSN-AS1Q9NRJ2 163 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 TNFRSF18Q9Y5U5 241 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 BORCS7-ASMTA0A0B4J1R7 106 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 FAM223BA6NKX1 122 aa3.63□□□□□ -1.83
SF3B1-208ENST00000470268 IGKV1-17P01599 117 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 1119 ms