RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TRACP01848 142 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 C1QAP02745 245 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 NMBP08949 121 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 YPEL3P61236 119 aaPredicted RBP3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 CXCL6P80162 114 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 TMEM155Q4W5P6 130 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 OR2T2Q6IF00 324 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 PDPNQ86YL7 162 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 ZNF101Q8IZC7 436 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 ATP6V0E2Q8NHE4 81 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 WFDC5Q8TCV5 224 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 CASKIN1Q8WXD9 1431 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 TSLPQ969D9 159 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 SHANK2-AS3Q9BTD1 123 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 ZNF835Q9Y2P0 537 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 LINC00588Q9Y4M8 146 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 DNAJC15Q9Y5T4 150 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 C2orf16Q68DN1 1984 aa3.4□□□□□ -1.87
CCDC88A-210ENST00000468534 INO80Q9ULG1 1556 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 TRGV5A0A0B4J1U4 118 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 IGLC7A0M8Q6 106 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 MCRIP1C9JLW8 97 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 TRGC1P0CF51 173 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 FABP4P15090 132 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 ELK1P19419 428 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 S100A4P26447 101 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 RNASE4P34096 147 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 SNCAP37840 140 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 SNRPD3P62318 126 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 LINC00301Q8NCQ3 95 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 MAL2Q969L2 176 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 LSM10Q969L4 123 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 VSIG2Q96IQ7 327 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 PRELID3AQ96N28 172 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 SMIM14Q96QK8 99 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 FGFBP2Q9BYJ0 223 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 TXNL4BQ9NX01 149 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 IL36BQ9NZH7 164 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 LSM2Q9Y333 95 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 KLK5Q9Y337 293 aaPredicted RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 CFTRP13569 1480 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 KIF21AQ7Z4S6 1674 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 ARHGAP5Q13017 1502 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 MAGI3Q5TCQ9 1506 aa3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.39□□□□□ -1.87
CCDC88A-210ENST00000468534 OBSCNQ5VST9 7968 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 IGHV3OR15-7A0A075B7D8 119 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 IGHV3-35A0A0C4DH35 117 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 IGKV1-6A0A0C4DH72 117 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 K7ERJ3 54 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 HIST1H2BKO60814 126 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 ZNF324O75467 553 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 IGKV1-39P01597 117 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 RBP4P02753 201 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 IGKV1D-39P04432 117 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 HIST1H2BJP06899 126 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 ZNF32P17041 273 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 TAS2R45P59539 299 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 RPL30P62888 115 aaKnown RBP3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 BSPH1Q075Z2 132 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 GUSBP11Q6P575 273 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 LYPD2Q6UXB3 125 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 Q6ZS92 163 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 ARPINQ7Z6K5 226 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 NPBQ8NG41 125 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 ZNF431Q8TF32 576 aaPredicted RBP3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 C7orf33Q8WU49 177 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 RMI2Q96E14 147 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 YPEL2Q96QA6 119 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 SLC35B3Q9H1N7 401 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 SLC39A9Q9NUM3 307 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 DHRS4-AS1Q9P1J3 65 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 TPRKBQ9Y3C4 175 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 FYCO1Q9BQS8 1478 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 OTOFQ9HC10 1997 aa3.38□□□□□ -1.87
CCDC88A-210ENST00000468534 DOCK6Q96HP0 2047 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 HFM1A2PYH4 1435 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 MLH3Q9UHC1 1453 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 IGLV3-10A0A075B6K4 115 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 F8W1H4 67 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 C19orf84I3L1E1 186 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 HBDP02042 147 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 CSN1S1P47710 185 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 SPRNQ5BIV9 151 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 C2orf66Q6UXQ4 117 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 Q8N2B8 174 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 CD177Q8N6Q3 437 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 DAND5Q8N907 189 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 OR10G2Q8NGC3 310 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 POP5Q969H6 163 aaKnown RBP3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 PKMYT1Q99640 499 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 B9D2Q9BPU9 175 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 BCL2L10Q9HD36 194 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 TP53TG3Q9ULZ0 132 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 EPDR1Q9UM22 224 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 CSAG2Q9Y5P2 127 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 FER1L6Q2WGJ9 1857 aa3.37□□□□□ -1.87
CCDC88A-210ENST00000468534 CEP164Q9UPV0 1460 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 SLIT3O75094 1523 aa3.36□□□□□ -1.87
CCDC88A-210ENST00000468534 PRDM15P57071 1507 aaPredicted RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms