RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CCL13Q99616 98 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 MLST8Q9BVC4 326 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 MRPL20Q9BYC9 149 aaKnown RBP9.4□□□□□ -0.9
CPSF3-202ENST00000460593 MS4A6AQ9H2W1 248 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 AP5S1Q9NUS5 200 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 PILRBQ9UKJ0 227 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 SPCS1Q9Y6A9 102 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 CACNA1GO43497 2377 aa9.4□□□□□ -0.9
CPSF3-202ENST00000460593 TRGV5A0A0B4J1U4 118 aa9.4□□□□□ -0.91
CPSF3-202ENST00000460593 K7ERJ3 54 aa9.4□□□□□ -0.91
CPSF3-202ENST00000460593 MYCNOSP40205 109 aa9.4□□□□□ -0.91
CPSF3-202ENST00000460593 CACNG7P62955 275 aa9.4□□□□□ -0.91
CPSF3-202ENST00000460593 SMAGPQ0VAQ4 97 aa9.4□□□□□ -0.91
CPSF3-202ENST00000460593 PRSS22Q9GZN4 317 aa9.4□□□□□ -0.91
CPSF3-202ENST00000460593 TPSG1Q9NRR2 321 aa9.4□□□□□ -0.91
CPSF3-202ENST00000460593 TMSB15BA0A087X1C1 80 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 KBTBD11-OT1A0A1B0GTJ5 212 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 C19orf71A6NCJ1 209 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 C22orf46C9J442 243 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 DLL1O00548 723 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 HOXC12P31275 282 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 SRSF12Q8WXF0 261 aaKnown RBP9.39□□□□□ -0.91
CPSF3-202ENST00000460593 C19orf24Q9BVV8 132 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 SERTM2A0A1B0GWG4 89 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 CGB1A6NKQ9 187 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 PLP1P60201 277 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 PRB3Q04118 309 aaPredicted RBP9.39□□□□□ -0.91
CPSF3-202ENST00000460593 GOLT1AQ6ZVE7 132 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 ZNF714Q96N38 554 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 Q9H3A6 140 aa9.39□□□□□ -0.91
CPSF3-202ENST00000460593 TEX48A0A1B0GUV7 120 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 TCRBV4S1A1TA0A5B7 111 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 CIDEAO60543 219 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 CGB3P0DN86 165 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 CGB7P0DN87 165 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 FA2HQ7L5A8 372 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 MTURNQ8N3F0 131 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 OR1L8Q8NGR8 309 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 A0A096LNJ9 63 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 SAMD13Q5VXD3 122 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 TMEM108Q6UXF1 575 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 C18orf15Q96N68 181 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 NPFFR1Q9GZQ6 430 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 POLEQ07864 2286 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 TRIOBPQ9H2D6 2365 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 TMEM265A0A087WTH1 108 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 TCRAP04437 139 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 SEC11AP67812 179 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 ERHP84090 104 aaKnown RBP9.38□□□□□ -0.91
CPSF3-202ENST00000460593 TIMM23BQ5SRD1 257 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 FAM162BQ5T6X4 162 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 ADTRPQ96IZ2 230 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 RITA1Q96K30 269 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 NDFIP1Q9BT67 221 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 NDUFA4L2Q9NRX3 87 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 INSIG2Q9Y5U4 225 aa9.38□□□□□ -0.91
CPSF3-202ENST00000460593 ZZEF1O43149 2961 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 IGHV3-72A0A0B4J1Y9 119 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 PPIAL4CA0A0B4J2A2 164 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 SMKR1H3BMG3 65 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 H3BRM9 83 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 J3QW42 95 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 PPIAL4GP0DN37 164 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 INO80CQ6PI98 192 aaPredicted RBP9.37□□□□□ -0.91
CPSF3-202ENST00000460593 OR1L4Q8NGR5 311 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 PPP1R35Q8TAP8 253 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 CHTOPQ9Y3Y2 248 aaKnown RBP9.37□□□□□ -0.91
CPSF3-202ENST00000460593 IGHV1-18A0A0C4DH31 117 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 ZNF785A8K8V0 405 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 C9orf172C9J069 976 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 LTAP01374 205 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 IGKV3-15P01624 115 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 NEGR1Q7Z3B1 354 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 JKAMPQ9P055 326 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 DSCAML1Q8TD84 2053 aa9.37□□□□□ -0.91
CPSF3-202ENST00000460593 A0A1W2PNU3 283 aaPredicted RBP9.36□□□□□ -0.91
CPSF3-202ENST00000460593 NKX2-8O15522 239 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 CCL3L1P16619 93 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 AZU1P20160 251 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 FCGR2BP31994 310 aaPredicted RBP9.36□□□□□ -0.91
CPSF3-202ENST00000460593 RBPJQ06330 500 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 PMS2CLQ68D20 193 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 UBALD2Q8IYN6 164 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 C17orf77Q96MU5 243 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 ADGRG4Q8IZF6 3080 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 A1L4Q6 167 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 A6NDN8 102 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 OVOL3O00110 214 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 WFDC12Q8WWY7 111 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 A0A1W2PPM0 123 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 GCSHP23434 173 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 DLX1P56177 255 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 POU2AF1Q16633 256 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 VSTM2AQ8TAG5 236 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 GUCD1Q96NT3 240 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 DKK2Q9UBU2 259 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 KLF12Q9Y4X4 402 aa9.36□□□□□ -0.91
CPSF3-202ENST00000460593 TMEM213A2RRL7 107 aa9.35□□□□□ -0.91
CPSF3-202ENST00000460593 D6R8Y8 96 aa9.35□□□□□ -0.91
CPSF3-202ENST00000460593 CR1LQ2VPA4 569 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms