RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MAPK1IP1LQ8NDC0 245 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 VGLL1Q99990 258 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 DPH3P1Q9H4G8 78 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 TCRAP04437 139 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 DSCR9P59020 149 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 BPESC1Q9GZL8 116 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 NXT2Q9NPJ8 142 aaKnown RBP14.06□□□□□ -0.16
PTPRF-209ENST00000438120 CRIM1Q9NZV1 1036 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 ZNRD1Q9P1U0 126 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 SRRM4A7MD48 611 aaKnown RBP14.06□□□□□ -0.16
PTPRF-209ENST00000438120 ZNF815PA8K554 130 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 FGF16O43320 207 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 B3GALT5-AS1P59052 145 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 OR5A1Q8NGJ0 315 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 LAMTOR2Q9Y2Q5 125 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 A0A0G2JMZ2 1700 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 LRRC37A2A6NM11 1700 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 LTBP1Q14766 1721 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 STAG3L3P0CL85 134 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 FAM166AQ6J272 317 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 MBD3L1Q8WWY6 194 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 UBE2E2Q96LR5 201 aa14.06□□□□□ -0.16
PTPRF-209ENST00000438120 CXCL1P09341 107 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 MLANAQ16655 118 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 TRGV1A0A0A0MS02 117 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 TMEM249Q2WGJ8 235 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 BMPERQ8N8U9 685 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 A0A1B0GV72 72 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 ORMDL2Q53FV1 153 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 IGKCP01834 107 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 LCNL1Q6ZST4 164 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 D6R8Y8 96 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 C5orf64Q2M2E5 130 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 PIP4P2Q8N4L2 257 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 GNB1LQ9BYB4 327 aa14.05□□□□□ -0.16
PTPRF-209ENST00000438120 SPTBN1Q01082 2364 aaKnown RBP14.04□□□□□ -0.16
PTPRF-209ENST00000438120 COL6A6A6NMZ7 2263 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 MPDZO75970 2070 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 Q6P435 159 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 LYZL1Q6UWQ5 148 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 AGMATQ9BSE5 352 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 F2Z2F3 143 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 LINC00158P58513 81 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 CYTL1Q9NRR1 136 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 RPP25LQ8N5L8 163 aaKnown RBP14.04□□□□□ -0.16
PTPRF-209ENST00000438120 KLHL30-AS1Q8NEE0 82 aa14.04□□□□□ -0.16
PTPRF-209ENST00000438120 FER1L5A0AVI2 2057 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 SLC25A20O43772 301 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 ZNF876PQ49A33 203 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 C20orf204Q6ZNR8 217 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 MBD3L4A6NDZ8 208 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-209ENST00000438120 MBD3L3A6NE82 208 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-209ENST00000438120 MBD3L5A6NJ08 208 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-209ENST00000438120 NTF4P34130 210 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 UBE2DNLQ8IWF7 75 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 MBD3L2Q8NHZ7 208 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-209ENST00000438120 IFI27L1Q96BM0 104 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 COL4A6Q14031 1691 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 TRAV8-1A0A0A6YYK1 113 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 LOC105371267A0A1B0GV96 52 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 PPBPP02775 128 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 NMSQ5H8A3 153 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 MINOS1Q5TGZ0 78 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 RUSC1-AS1Q66K80 236 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 MINOS1-NBL1R4GNA1 71 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 TRAV8-2A0A0B4J237 113 aa14.03□□□□□ -0.16
PTPRF-209ENST00000438120 MYO7BQ6PIF6 2116 aa14.02□□□□□ -0.16
PTPRF-209ENST00000438120 TRAV9-2A0A087WT02 112 aa14.02□□□□□ -0.17
PTPRF-209ENST00000438120 A0A087WX48 190 aa14.02□□□□□ -0.17
PTPRF-209ENST00000438120 PCP4P48539 62 aa14.02□□□□□ -0.17
PTPRF-209ENST00000438120 LINC00587B1AMM8 73 aa14.02□□□□□ -0.17
PTPRF-209ENST00000438120 RPRMLQ8N4K4 120 aa14.02□□□□□ -0.17
PTPRF-209ENST00000438120 SIGLEC9Q9Y336 463 aa14.02□□□□□ -0.17
PTPRF-209ENST00000438120 HS3ST6Q96QI5 342 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 IGKV1-16P04430 117 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 E7EQL1 145 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 LAGE3Q14657 143 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 Q6ZS92 163 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 C5orf30Q96GV9 206 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 SH2D1AO60880 128 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 ATP5L2Q7Z4Y8 100 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 LSM4Q9Y4Z0 139 aaKnown RBP14.01□□□□□ -0.17
PTPRF-209ENST00000438120 HOXA3O43365 443 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-209ENST00000438120 SAA4P35542 130 aa14.01□□□□□ -0.17
PTPRF-209ENST00000438120 PRADC1Q9BSG0 188 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 A0A0G2JRQ6 117 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 GLRX5Q86SX6 157 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 TRGV9Q99603 122 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 CLDN16Q9Y5I7 305 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 RNF223E7ERA6 249 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 LCN12Q6JVE5 192 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 TDGF1P3P51864 188 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 ZNF138P52744 262 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 MEGF9Q9H1U4 602 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 ACACAQ13085 2346 aa14□□□□□ -0.17
PTPRF-209ENST00000438120 ASCL4Q6XD76 172 aa13.99□□□□□ -0.17
PTPRF-209ENST00000438120 C14orf178Q8N769 122 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-209ENST00000438120 TRBV7-1A0A0A6YYK4 115 aa13.99□□□□□ -0.17
PTPRF-209ENST00000438120 M0R1W7 72 aa13.99□□□□□ -0.17
PTPRF-209ENST00000438120 TMEM14EPQ6UXP3 125 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms