RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 APOMO95445 188 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 GRPP07492 148 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 RNASE2P10153 161 aaKnown RBP12.93□□□□□ -0.34
C9orf3-206ENST00000428313 GATA3P23771 443 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 COL8A1P27658 744 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 TCTAP57738 103 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 LOXL1Q08397 574 aaPredicted RBP12.93□□□□□ -0.34
C9orf3-206ENST00000428313 PATE2Q6UY27 113 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 SYT8Q8NBV8 401 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 FREM1Q5H8C1 2179 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 FAM106CPP0CH98 169 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 FAM106AQ4KMX7 169 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 Q6ZUT4 128 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 SGK494Q96LW2 274 aa12.93□□□□□ -0.34
C9orf3-206ENST00000428313 WNT9BO14905 357 aa12.92□□□□□ -0.34
C9orf3-206ENST00000428313 RITA1Q96K30 269 aa12.92□□□□□ -0.34
C9orf3-206ENST00000428313 U3KQK5 164 aa12.92□□□□□ -0.34
C9orf3-206ENST00000428313 MT-ATP8P03928 68 aa12.92□□□□□ -0.34
C9orf3-206ENST00000428313 MYOD1P15172 320 aa12.92□□□□□ -0.34
C9orf3-206ENST00000428313 PAX8Q06710 450 aa12.92□□□□□ -0.34
C9orf3-206ENST00000428313 ZNF493Q6ZR52 646 aa12.92□□□□□ -0.34
C9orf3-206ENST00000428313 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.92□□□□□ -0.34
C9orf3-206ENST00000428313 A0A1B0GWB2 263 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 SHISA2Q6UWI4 295 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 TRBV25-1A0A075B6N4 114 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 UPK2O00526 184 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 TNFRSF13BO14836 293 aaPredicted RBP12.91□□□□□ -0.34
C9orf3-206ENST00000428313 TCRAP04437 139 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 ARMS2P0C7Q2 107 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 COX6A1P12074 109 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 MLANAQ16655 118 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 RRN3P1Q2M238 152 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 Q6ZS52 159 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 RND1Q92730 232 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 DCTN5Q9BTE1 182 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 ZMAT4Q9H898 229 aa12.91□□□□□ -0.34
C9orf3-206ENST00000428313 CHD9Q3L8U1 2897 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 IQCF6A8MYZ5 107 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 RFPL3SP0C7P2 107 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 C12orf74Q32Q52 190 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 Q6AWC8 147 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 Q86TA4 180 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 TUSC5Q8IXB3 177 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 C11orf53Q8IXP5 236 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 ANAPC13Q9BS18 74 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 VCX2Q9H322 139 aa12.9□□□□□ -0.34
C9orf3-206ENST00000428313 NPIPB5A8MRT5 1133 aa12.9□□□□□ -0.35
C9orf3-206ENST00000428313 NDUFS7O75251 213 aa12.9□□□□□ -0.35
C9orf3-206ENST00000428313 ZNF134P52741 427 aa12.9□□□□□ -0.35
C9orf3-206ENST00000428313 LOXL3P58215 753 aa12.9□□□□□ -0.35
C9orf3-206ENST00000428313 B4GALT7Q9UBV7 327 aa12.9□□□□□ -0.35
C9orf3-206ENST00000428313 METRNQ9UJH8 293 aa12.9□□□□□ -0.35
C9orf3-206ENST00000428313 TRBV7-9A0A0J9YWB2 115 aa12.89□□□□□ -0.35
C9orf3-206ENST00000428313 IGHV3-64DA0A0J9YX35 117 aa12.89□□□□□ -0.35
C9orf3-206ENST00000428313 DKK2Q9UBU2 259 aa12.89□□□□□ -0.35
C9orf3-206ENST00000428313 SDK2Q58EX2 2172 aa12.89□□□□□ -0.35
C9orf3-206ENST00000428313 KIAA0100Q14667 2235 aaKnown RBP12.89□□□□□ -0.35
C9orf3-206ENST00000428313 IGKV2D-26A0A0A0MRZ7 120 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 TRBV6-1A0A0K0K1D8 114 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 XGP55808 180 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 TBC1D28Q2M2D7 210 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 LINC00305Q7Z4B0 112 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 WI2-2373I1.2A0A1W2PRP0 233 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 C16orf97H3BN30 126 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 THBDP07204 575 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 AMTNQ6UX39 209 aa12.88□□□□□ -0.35
C9orf3-206ENST00000428313 C1orf229Q6ZS94 237 aaPredicted RBP12.88□□□□□ -0.35
C9orf3-206ENST00000428313 TFF1P04155 84 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 EVI2AP22794 236 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 ZNF826PQ6ZT77 177 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 THAP8Q8NA92 274 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 TMEM178AQ8NBL3 297 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 OSR1Q8TAX0 266 aaPredicted RBP12.87□□□□□ -0.35
C9orf3-206ENST00000428313 PRELID3AQ96N28 172 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 HHLA3Q9XRX5 114 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 BRWD1Q9NSI6 2320 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 D6R8Y8 96 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 CFHR2P36980 270 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 ABHD17BQ5VST6 288 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 MDP1Q86V88 176 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 DEFB119Q8N690 84 aa12.87□□□□□ -0.35
C9orf3-206ENST00000428313 LOC389332A0A1B0GUA5 103 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 ALKBH6Q3KRA9 238 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 ORMDL3Q8N138 153 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 RALYQ9UKM9 306 aaKnown RBP12.86□□□□□ -0.35
C9orf3-206ENST00000428313 DYSFO75923 2080 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 INS-IGF2F8WCM5 200 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 EDDM3AQ14507 147 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 LINC01559Q495D7 138 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 KLF17Q5JT82 389 aaPredicted RBP12.86□□□□□ -0.35
C9orf3-206ENST00000428313 CFAP126Q5VTH2 177 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 ZNF562Q6V9R5 426 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 TMEM190Q8WZ59 177 aa12.86□□□□□ -0.35
C9orf3-206ENST00000428313 AKIRIN1Q9H9L7 192 aaPredicted RBP12.86□□□□□ -0.35
C9orf3-206ENST00000428313 TRANK1O15050 2925 aa12.85□□□□□ -0.35
C9orf3-206ENST00000428313 IGKV1D-37A0A075B6S9 117 aa12.85□□□□□ -0.35
C9orf3-206ENST00000428313 CIARTQ8N365 385 aaPredicted RBP12.85□□□□□ -0.35
C9orf3-206ENST00000428313 RBMXL3Q8N7X1 1067 aaKnown RBP12.85□□□□□ -0.35
C9orf3-206ENST00000428313 SRSF12Q8WXF0 261 aaKnown RBP12.85□□□□□ -0.35
C9orf3-206ENST00000428313 CXXC4Q9H2H0 198 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms