RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 GNG5P63218 68 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 STXBP6Q8NFX7 210 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 C18orf32Q8TCD1 76 aa11.43□□□□□ -0.58
LIG1-202ENST00000427526 CRYGBP07316 175 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 CTRLP40313 264 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 HCP5Q6MZN7 132 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 TEX45Q8NA69 505 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 TMEM116Q8NCL8 245 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 PERPQ96FX8 193 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 TRGV9Q99603 122 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 MRPL27Q9P0M9 148 aaKnown RBP11.42□□□□□ -0.58
LIG1-202ENST00000427526 MOSP00540 346 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 ORM2P19652 201 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 PMCHP20382 165 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 TMEM133Q9H2Q1 129 aa11.42□□□□□ -0.58
LIG1-202ENST00000427526 IGHV3-72A0A0B4J1Y9 119 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 VWC2LB2RUY7 222 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 PRRX1P54821 245 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 FBXL19-AS1Q494R0 122 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 OR4B1Q8NGF8 309 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 ENSAO43768 121 aaKnown RBP11.41□□□□□ -0.58
LIG1-202ENST00000427526 BATFQ16520 125 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 OR1B1Q8NGR6 318 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 SMIM12Q96EX1 92 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 CHRDL1Q9BU40 450 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 MLST8Q9BVC4 326 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 PLXNB1O43157 2135 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 LYNX1G3V0Z9 82 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 CORTO00230 105 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 C3orf79P0CE67 100 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 LYNX1P0DP58 116 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 HIST1H1EP10412 219 aaKnown RBP11.41□□□□□ -0.58
LIG1-202ENST00000427526 LHFPL4Q7Z7J7 247 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 FAM19A2Q8N3H0 131 aa11.41□□□□□ -0.58
LIG1-202ENST00000427526 PGPA6NDG6 321 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 CNTFRP26992 372 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 KLF5Q13887 457 aaPredicted RBP11.4□□□□□ -0.58
LIG1-202ENST00000427526 PRR27Q6MZM9 219 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 C19orf35Q6ZS72 473 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 BLNKQ8WV28 456 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 ABCA4P78363 2273 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 TPRP12270 2363 aaKnown RBP11.4□□□□□ -0.58
LIG1-202ENST00000427526 ANKHD1Q8IWZ3 2542 aaKnown RBP11.4□□□□□ -0.58
LIG1-202ENST00000427526 HIGD1CA8MV81 97 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 B9A039 149 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 NBEAP1P0C6P0 100 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 PAX2Q02962 417 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 CSTL1Q9H114 145 aa11.4□□□□□ -0.58
LIG1-202ENST00000427526 A0A1B0GXF2 115 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 NDUFS8O00217 210 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 OR2J3O76001 311 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 IGLV1-47P01700 117 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 SLC25A5P05141 298 aaKnown RBP11.39□□□□□ -0.59
LIG1-202ENST00000427526 GP9P14770 177 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 RPL27AP46776 148 aaKnown RBP11.39□□□□□ -0.59
LIG1-202ENST00000427526 PLP1P60201 277 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 UBE2G1P62253 170 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 GPR82Q96P67 336 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 ALKBH7Q9BT30 221 aaPredicted RBP11.39□□□□□ -0.59
LIG1-202ENST00000427526 IGHV1-69-2A0A0G2JMI3 117 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 LINC00322Q6ZN03 302 aaPredicted RBP11.39□□□□□ -0.59
LIG1-202ENST00000427526 TNFRSF14Q92956 283 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 SGK494Q96LW2 274 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 PRSS22Q9GZN4 317 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 SIGLEC9Q9Y336 463 aa11.39□□□□□ -0.59
LIG1-202ENST00000427526 HYPMO75409 117 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 TNXAQ16473 311 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 COL5A1-AS1Q5SY13 56 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 ATP5L2Q7Z4Y8 100 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 MUC15Q8N387 334 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 LRBAP50851 2863 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 IGHV2-26A0A0B4J1V2 119 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 DLX1P56177 255 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 C8orf46Q8TAG6 207 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 VPS25Q9BRG1 176 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 PIEZO1Q92508 2521 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 TOMM40O96008 361 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 LTAP01374 205 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 APELAP0DMC3 54 aa11.38□□□□□ -0.59
LIG1-202ENST00000427526 ITPR1Q14643 2758 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 LOC105371242A0A075B767 164 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 TEX22C9J3V5 150 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 SPATA45Q537H7 98 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 SSBP4Q9BWG4 385 aaPredicted RBP11.37□□□□□ -0.59
LIG1-202ENST00000427526 PRORYQ9H606 182 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 IGHV3-21A0A0B4J1V1 117 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 C19orf71A6NCJ1 209 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 C5orf17Q8NAS9 161 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 FMC1Q96HJ9 113 aa11.37□□□□□ -0.59
LIG1-202ENST00000427526 F11RQ9Y624 299 aaKnown RBP11.37□□□□□ -0.59
LIG1-202ENST00000427526 IGHV1-3A0A0C4DH29 117 aa11.36□□□□□ -0.59
LIG1-202ENST00000427526 NTF3P20783 257 aa11.36□□□□□ -0.59
LIG1-202ENST00000427526 GPR6P46095 362 aaPredicted RBP11.36□□□□□ -0.59
LIG1-202ENST00000427526 ZNF672Q499Z4 452 aaPredicted RBP11.36□□□□□ -0.59
LIG1-202ENST00000427526 PPP1R27Q86WC6 154 aa11.36□□□□□ -0.59
LIG1-202ENST00000427526 RALYQ9UKM9 306 aaKnown RBP11.36□□□□□ -0.59
LIG1-202ENST00000427526 BUB1B-PAK6H3BSN5 160 aa11.36□□□□□ -0.59
LIG1-202ENST00000427526 TCRAP04437 139 aa11.36□□□□□ -0.59
LIG1-202ENST00000427526 BORCS7Q96B45 105 aa11.36□□□□□ -0.59
LIG1-202ENST00000427526 CLEC7AQ9BXN2 247 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms