RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 IFNA1P01562 189 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 TRBV12-3P01733 135 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 RPEL1Q2QD12 228 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 SPATA31B1PQ5VZV4 182 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 MIR17HGQ75NE6 70 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 SSX7Q7RTT5 188 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 UHRF2Q96PU4 802 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 SEPSECSQ9HD40 501 aaKnown RBP13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 TRAV1-1A0A0B4J248 108 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 NDUFA4O00483 81 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 EIF3GO75821 320 aaKnown RBP eCLIP13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 C8orf88P0DMB2 117 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 CDX1P47902 265 aaPredicted RBP13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 KIAA0141Q14154 515 aaPredicted RBP13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 TOMM20LQ6UXN7 152 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 PATE2Q6UY27 113 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 KLHL30-AS1Q8NEE0 82 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 NARS2Q96I59 477 aaKnown RBP13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 C20orf24Q9BUV8 137 aa13.22□□□□□ -0.29
CCDC28B-202ENST00000421922 STAG3L2P0CL84 134 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 STAG3L3P0CL85 134 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 ARL14EPLP0DKL9 152 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 PPT1P50897 306 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 USF2Q15853 346 aaPredicted RBP13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 FAM106AQ4KMX7 169 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 PQLC2Q6ZP29 291 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 C4orf3Q8WVX3 66 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 DPF1Q92782 380 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 MARC2Q969Z3 335 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 METTL26Q96S19 204 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 SLC25A39Q9BZJ4 359 aaPredicted RBP13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 MED9Q9NWA0 146 aa13.21□□□□□ -0.3
CCDC28B-202ENST00000421922 COL6A5A8TX70 2615 aa13.2□□□□□ -0.3
CCDC28B-202ENST00000421922 HSPB1P04792 205 aaKnown RBP13.2□□□□□ -0.3
CCDC28B-202ENST00000421922 C11orf44Q8N8P7 122 aa13.2□□□□□ -0.3
CCDC28B-202ENST00000421922 STXBP6Q8NFX7 210 aa13.2□□□□□ -0.3
CCDC28B-202ENST00000421922 LYPD6BQ8NI32 183 aa13.2□□□□□ -0.3
CCDC28B-202ENST00000421922 WFDC12Q8WWY7 111 aa13.2□□□□□ -0.3
CCDC28B-202ENST00000421922 MRPL27Q9P0M9 148 aaKnown RBP13.2□□□□□ -0.3
CCDC28B-202ENST00000421922 IGHV3OR16-8A0A075B7F1 116 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 ZNF320A2RRD8 509 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 CD28P10747 220 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 PSMB3P49720 205 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 PROK1P58294 105 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 FOXL1Q12952 345 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 SHANK2-AS3Q9BTD1 123 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 ZFAND3Q9H8U3 227 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 GNG13Q9P2W3 67 aa13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 TSSC4Q9Y5U2 329 aaPredicted RBP13.19□□□□□ -0.3
CCDC28B-202ENST00000421922 H3BRN7 92 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 ZP3P21754 424 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 UBE2L3P68036 154 aaKnown RBP13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 TCTEX1D4Q5JR98 221 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 WIPF2Q8TF74 440 aaPredicted RBP13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 PAXXQ9BUH6 204 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 SCRT1Q9BWW7 348 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 SLC25A2Q9BXI2 301 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 EIF5A2Q9GZV4 153 aaKnown RBP13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 MANBALQ9NQG1 85 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 TMEM167BQ9NRX6 74 aa13.18□□□□□ -0.3
CCDC28B-202ENST00000421922 TRAV5A0A0B4J249 113 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 A0A1W2PRX2 142 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 RAB19A4D1S5 217 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 NPPCP23582 126 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 GCHFRP30047 84 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 TOR2AQ5JU69 321 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 SLC7A5P1Q8MH63 180 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 TMEM190Q8WZ59 177 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 OR51M1Q9H341 326 aa13.17□□□□□ -0.3
CCDC28B-202ENST00000421922 FBN1P35555 2871 aaKnown RBP13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 IGHV4OR15-8A0A075B7B6 117 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 A0A087WW49 117 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 ZNF98A6NK75 572 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 LINC01619G3V211 115 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 I3L521 148 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 ZNF207O43670 478 aaKnown RBP13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 TAGLN2P37802 199 aaKnown RBP13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 CCL20P78556 96 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 GUK1Q16774 197 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 MORN5Q5VZ52 161 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 LEMD1Q68G75 181 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 BPIFA4PQ86YQ2 179 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 GPHB5Q86YW7 130 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 SPATA3Q8NHX4 192 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 GRAMD2BQ96HH9 432 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 FAM210AQ96ND0 272 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 CITED2Q99967 270 aaPredicted RBP13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 TMPRSS5Q9H3S3 457 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 UFC1Q9Y3C8 167 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 STAB1Q9NY15 2570 aa13.16□□□□□ -0.3
CCDC28B-202ENST00000421922 BMI1P35226 326 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 PEA15Q15121 130 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 HAGHQ16775 308 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 DEFB136Q30KP8 78 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 C18orf65Q6ZTR6 163 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 OR8I2Q8N0Y5 310 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 OR11H1Q8NG94 326 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 OR4F17Q8NGA8 305 aa13.15□□□□□ -0.3
CCDC28B-202ENST00000421922 OR1N2Q8NGR9 330 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms