RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 TRBV24-1A0A075B6N3 115 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 C17orf100A8MU93 164 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 RHODO00212 210 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 MINOS1Q5TGZ0 78 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 MINOS1-NBL1R4GNA1 71 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 NCOR1O75376 2440 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 SYS1-DBNDD2H3BUS1 97 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 PSG3Q16557 428 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 LIMS2Q7Z4I7 341 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 A0A0G2JK05 382 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 RNASE6Q93091 150 aaKnown RBP6.54□□□□□ -1.36
SYNE1-210ENST00000409694 S4R3C0 116 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 NSUN5P1Q3KNT7 163 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 SRSF8Q9BRL6 282 aaKnown RBP6.54□□□□□ -1.36
SYNE1-210ENST00000409694 IGHV3-11P01762 117 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 HIST3H2BBQ8N257 126 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 TRBV25-1A0A075B6N4 114 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 CECR9P0C854 216 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 MORN2Q502X0 79 aa6.54□□□□□ -1.36
SYNE1-210ENST00000409694 COL24A1Q17RW2 1714 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.53□□□□□ -1.36
SYNE1-210ENST00000409694 SEC61GP60059 68 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 C22orf46C9J442 243 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 F8VVB4 439 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 F8VWA3 439 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 CRLF1O75462 422 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 ZNF625Q96I27 306 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-210ENST00000409694 LHBP01229 141 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 MPZP25189 248 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 CFPP27918 469 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 C1orf159Q96HA4 380 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 GAGE12JA6NER3 117 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 RBM3P98179 157 aaKnown RBP6.53□□□□□ -1.36
SYNE1-210ENST00000409694 GAGE1Q13065 139 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 GAGE4Q13068 117 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 GAGE5Q13069 117 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 GAGE6Q13070 117 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 SRRM4A7MD48 611 aaKnown RBP6.53□□□□□ -1.36
SYNE1-210ENST00000409694 THBDP07204 575 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 C15orf32Q32M92 178 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 LINC01545Q5VT33 79 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 EML6Q6ZMW3 1958 aa6.53□□□□□ -1.36
SYNE1-210ENST00000409694 ACYP1P07311 99 aa6.52□□□□□ -1.36
SYNE1-210ENST00000409694 IL9P15248 144 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 I3L3M4 83 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 LINC01560Q8TB33 94 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 NABP1Q96AH0 204 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 RAMP3O60896 148 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 FOXG1P55316 489 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-210ENST00000409694 TMEM75Q8N9X5 138 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 CACNA1IQ9P0X4 2223 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 C1orf122Q6ZSJ8 110 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 REPIN1Q9BWE0 567 aaKnown RBP6.52□□□□□ -1.37
SYNE1-210ENST00000409694 COL5A3P25940 1745 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-210ENST00000409694 FCN3O75636 299 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 NPIPB5A8MRT5 1133 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 TMEM52Q8NDY8 209 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 FNDC10F2Z333 226 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 OCC1Q8TAD7 63 aa6.52□□□□□ -1.37
SYNE1-210ENST00000409694 A0A087X0K7 114 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 A6NNC1 897 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 CCL3L1P16619 93 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 MRPL14Q6P1L8 145 aaKnown RBP6.51□□□□□ -1.37
SYNE1-210ENST00000409694 C20orf204Q6ZNR8 217 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 AMELYQ99218 206 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 STPG4Q8N801 248 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 ATP6V0BQ99437 205 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 ARFGEF3Q5TH69 2177 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 ZSWIM8A7E2V4 1837 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 SH2D1AO60880 128 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 SLC22A18ASQ8N1D0 253 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 CELA2AP08217 269 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 IGKV2-40A0A087WW87 121 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-210ENST00000409694 IGKV2D-40P01614 121 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-210ENST00000409694 FUSP35637 526 aaKnown RBP eCLIP6.51□□□□□ -1.37
SYNE1-210ENST00000409694 NBL1P41271 181 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 CRYBA2P53672 197 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 DYSFO75923 2080 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 CENPVL1A0A0U1RR11 272 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 IGHG2P01859 326 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 KLRD1Q13241 179 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 LYZL1Q6UWQ5 148 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 SPXQ9BT56 116 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 RPP25Q9BUL9 199 aaKnown RBP6.51□□□□□ -1.37
SYNE1-210ENST00000409694 PYYP10082 97 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 MP68P56378 58 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 SMIM20Q8N5G0 67 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 NUP35Q8NFH5 326 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 TMEM158Q8WZ71 300 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 SPTA1P02549 2419 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 IGHV3-73A0A0B4J1V6 119 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 TRAV25A0A0B4J276 109 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 LTBRP36941 435 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 APOC4P55056 127 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 C5orf47Q569G3 176 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 RFNGQ9Y644 331 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 ABCA1O95477 2261 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 DENND4AQ7Z401 1863 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 IGKV1-8A0A0C4DH67 115 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 BVES-AS1Q5T3Y7 98 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms