RNA–Protein interactions for RNA: ENST00000406454.7

CACNA1C-222, Transcript of calcium voltage-gated channel subunit alpha1 C, human

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1C, Length 7,590 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-222	ENST00000406454	ANK1	P16157	1881 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	PPBP	P02775	128 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	LYL1	P12980	280 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	LINC00205	P59089	165 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	TMEM219	Q86XT9	240 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	STH	Q8IWL8	128 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	PROK2	Q9HC23	129 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454		H3BRM9	83 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	C5orf64	Q2M2E5	130 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	LYPD2	Q6UXB3	125 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	ATP5L2	Q7Z4Y8	100 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	OR5AN1	Q8NGI8	311 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	COLCA2	A8K830	154 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	HBD	P02042	147 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	NTF4	P34130	210 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	REG4	Q9BYZ8	158 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	CXCL1	P09341	107 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	LINC00614	P0C842	121 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	COL8A2	P25067	703 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	ZNF585B	Q52M93	769 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	S100A7L2	Q5SY68	101 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	FREM3	P0C091	2139 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	C15orf62	A8K5M9	175 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	JMJD8	Q96S16	334 aa		10.88	□□□□□ -0.67
CACNA1C-222	ENST00000406454	LINC01551	Q86U37	167 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	PLXNA3	P51805	1871 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	WISP1	O95388	367 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	TP53BP1	Q12888	1972 aa	Predicted RBP	10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	TCRA	P04437	139 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	NDUFA3	O95167	84 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	UNQ6494/PRO21346	Q6UXR6	183 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454		Q6ZRM9	215 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	OR5A1	Q8NGJ0	315 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454	SIGLEC9	Q9Y336	463 aa		10.87	□□□□□ -0.67
CACNA1C-222	ENST00000406454		B4DSR2	109 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	RPL15	P61313	204 aa	Known RBP	10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	CYB5R2	Q6BCY4	276 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	DERL1	Q9BUN8	251 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	KLF17	Q5JT82	389 aa	Predicted RBP	10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	IGKV2D-40	P01614	121 aa	Predicted RBP	10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454		F2Z2F3	143 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	UBE2C	O00762	179 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	SRSF1	Q07955	248 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	FOXL1	Q12952	345 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	EXOC3-AS1	Q8N2X6	119 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	MSRB2	Q9Y3D2	182 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	IGKV1-6	A0A0C4DH72	117 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	NPIPB5	A8MRT5	1133 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	PRB4	P10163	310 aa	Predicted RBP	10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	MRPL16	Q9NX20	251 aa	Known RBP	10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454	TRGV11	A0A075B6L2	103 aa		10.86	□□□□□ -0.67
CACNA1C-222	ENST00000406454		E9PQ18	207 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	CD33	P20138	364 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	SPSB3	Q6PJ21	355 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	MRPL52	Q86TS9	123 aa	Known RBP	10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	SVIP	Q8NHG7	77 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	PCP4	P48539	62 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	BRD3OS	Q6XYD6	125 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454		E7EQL1	145 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454		H3BUX3	64 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	ITGB1BP1	O14713	200 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	OR2K2	Q8NGT1	345 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	C1orf43	Q9BWL3	253 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	RNASE2	P10153	161 aa	Known RBP	10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	HIST1H4A	P62805	103 aa	Known RBP	10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	CHCHD1	Q96BP2	118 aa	Known RBP	10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	ZNF524	Q96C55	264 aa		10.85	□□□□□ -0.67
CACNA1C-222	ENST00000406454	TMEM155	Q4W5P6	130 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	C1orf147	Q96MC9	270 aa	Predicted RBP	10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	SRD5A1	P18405	259 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	HOXD3	P31249	432 aa	Predicted RBP	10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	IFI27	P40305	119 aa	Predicted RBP	10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	GLRX5	Q86SX6	157 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	LY96	Q9Y6Y9	160 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	VWA8	A3KMH1	1905 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	TRAV9-2	A0A087WT02	112 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	NIT1	Q86X76	327 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	HIST1H2BL	Q99880	126 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	LY6H	O94772	140 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	GZMB	P10144	247 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	ORMDL2	Q53FV1	153 aa		10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	YLPM1	P49750	1951 aa	Known RBP	10.84	□□□□□ -0.67
CACNA1C-222	ENST00000406454	VCX2	Q9H322	139 aa		10.83	□□□□□ -0.67
CACNA1C-222	ENST00000406454	TOMM7	Q9P0U1	55 aa		10.83	□□□□□ -0.67
CACNA1C-222	ENST00000406454	GVINP1	Q7Z2Y8	2422 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	ANAPC10	Q9UM13	185 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	LAMTOR2	Q9Y2Q5	125 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	HTN3	P15516	51 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	UBE2DNL	Q8IWF7	75 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	C11orf44	Q8N8P7	122 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	LMO1	P25800	156 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	HIST3H2BB	Q8N257	126 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	WFDC12	Q8WWY7	111 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	COL6A6	A6NMZ7	2263 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	IGKV1-16	P04430	117 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	LURAP1L	Q8IV03	231 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	RPRML	Q8N4K4	120 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	LINC00587	B1AMM8	73 aa		10.83	□□□□□ -0.68
CACNA1C-222	ENST00000406454	C9orf139	Q6ZV77	190 aa		10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms