RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MSMO1Q15800 293 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 LCN15Q6UWW0 184 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 SH2D6Q7Z4S9 175 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 KTN1-AS1Q86SY8 53 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 GPHB5Q86YW7 130 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 PLPP5Q8NEB5 264 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 MRPL30Q8TCC3 161 aaKnown RBP2.81□□□□□ -1.96
HMGB1-204ENST00000399489 RPS4Y2Q8TD47 263 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 TEX37Q96LM6 180 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 LINC00479Q96M42 142 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 CHCHD7Q9BUK0 85 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 WDR61Q9GZS3 305 aaKnown RBP2.81□□□□□ -1.96
HMGB1-204ENST00000399489 OTORQ9NRC9 128 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 CBLN4Q9NTU7 201 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 CSAG2Q9Y5P2 127 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 IER3IP1Q9Y5U9 82 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 N4BP2Q86UW6 1770 aaPredicted RBP2.81□□□□□ -1.96
HMGB1-204ENST00000399489 PIKFYVEQ9Y2I7 2098 aa2.81□□□□□ -1.96
HMGB1-204ENST00000399489 ITGB4P16144 1822 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 ARFGEF1Q9Y6D6 1849 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 UNC80Q8N2C7 3258 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 C4AP0C0L4 1744 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 IGHV3OR15-7A0A075B7D8 119 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 DPRXA6NFQ7 191 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 TLCD2A6NGC4 264 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 UBE2L6O14933 153 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 TLX1NBP0CAT3 122 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 SDC2P34741 201 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 TGFBR1P36897 503 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 TMBIM6P55061 237 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 RPL26P61254 145 aaKnown RBP2.8□□□□□ -1.96
HMGB1-204ENST00000399489 FGF12P61328 243 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 UBA52P62987 128 aaKnown RBP2.8□□□□□ -1.96
HMGB1-204ENST00000399489 HES1Q14469 280 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 LUZP6Q538Z0 58 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF678Q5SXM1 525 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 SSX8Q7RTT4 187 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 SLC35E3Q7Z769 313 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 TEX29Q8N6K0 151 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 MAPK1IP1LQ8NDC0 245 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 OR2T10Q8NGZ9 312 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 SDF2Q99470 211 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 SPIN2AQ99865 258 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 B9D2Q9BPU9 175 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 SPIN2BQ9BPZ2 258 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 TM2D3Q9BRN9 247 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 MIEN1Q9BRT3 115 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 ADAT1Q9BUB4 502 aaKnown RBP2.8□□□□□ -1.96
HMGB1-204ENST00000399489 CKLFQ9UBR5 152 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 FUT9Q9Y231 359 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 CUL9Q8IWT3 2517 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 HCFC1P51610 2035 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 MIA3Q5JRA6 1907 aa2.8□□□□□ -1.96
HMGB1-204ENST00000399489 SPTBN5Q9NRC6 3674 aaKnown RBP2.8□□□□□ -1.96
HMGB1-204ENST00000399489 A0A087X0T9 212 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 IGHV3-43A0A0B4J1X8 118 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 IGKV6D-41A0A0C4DH26 115 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 A8MWL6 223 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 CCDC179H3BU77 68 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 HLA-DQB1P01920 261 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 SPINK8P0C7L1 97 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF688P0C7X2 276 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 IL7P13232 177 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 NFYBP25208 207 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF93P35789 620 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 BTG2P78543 158 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 BSPH1Q075Z2 132 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 CATR1Q13166 79 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 C9orf129Q5T035 196 aaKnown RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 LCE3CQ5T5A8 94 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 FOXI2Q6ZQN5 318 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 LINC00299Q6ZSB3 139 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 ZFP62Q8NB50 900 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 BRK1Q8WUW1 75 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 C2orf50Q96LR7 162 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 RPRMQ9NS64 109 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF586Q9NXT0 402 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 MARCOQ9UEW3 520 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 RPL26L1Q9UNX3 145 aaKnown RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 LTBP1Q14766 1721 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 PLXND1Q9Y4D7 1925 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 SBF1O95248 1867 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF106Q9H2Y7 1883 aaKnown RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 FOCADQ5VW36 1801 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 TET2Q6N021 2002 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 MYH11P35749 1972 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 TRBV7-6A0A0J9YX20 115 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 IGHV3-64DA0A0J9YX35 117 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 ARRDC5A6NEK1 342 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 PLA2G10O15496 165 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 KRASP01116 189 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 CTSDP07339 412 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 CD7P09564 240 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 ZNF705DP0CH99 300 aaPredicted RBP2.79□□□□□ -1.96
HMGB1-204ENST00000399489 CD28P10747 220 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 CRYGSP22914 178 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 PSMB8P28062 276 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 INSL3P51460 131 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 AKR1C2P52895 323 aa2.79□□□□□ -1.96
HMGB1-204ENST00000399489 EIF5AP63241 154 aaKnown RBP2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms