RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SERF1AO75920 110 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 ZFP36P26651 326 aaKnown RBP10.6□□□□□ -0.71
CCDC3-202ENST00000378839 GDF5OSQ5U4N7 250 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 MRPL54Q6P161 138 aaKnown RBP10.6□□□□□ -0.71
CCDC3-202ENST00000378839 ATOH7Q8N100 152 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 BCL6BQ8N143 479 aaPredicted RBP10.6□□□□□ -0.71
CCDC3-202ENST00000378839 OR11H6Q8NGC7 330 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 LPAR2Q9HBW0 351 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 RNF114Q9Y508 228 aa10.6□□□□□ -0.71
CCDC3-202ENST00000378839 CDKN1AP38936 164 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 LY6DQ14210 128 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 SERTAD4Q9NUC0 356 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 S4R3C0 116 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 CACNA1AO00555 2505 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 NCOR2Q9Y618 2525 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 K7EIM0 57 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 IGKV1-17P01599 117 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 MMDQ15546 238 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 BAGE2Q86Y30 109 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 NUDT10Q8NFP7 164 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 RNASE8Q8TDE3 154 aaKnown RBP10.59□□□□□ -0.71
CCDC3-202ENST00000378839 PERPQ96FX8 193 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 NUDT11Q96G61 164 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 RAB1BQ9H0U4 201 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 EPDR1Q9UM22 224 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 PGPA6NDG6 321 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 ODF3BA8MYP8 253 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 PAX2Q02962 417 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 Q6ZWC4 215 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 GNB1LQ9BYB4 327 aa10.59□□□□□ -0.71
CCDC3-202ENST00000378839 CBY3A6NI87 242 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 HYPMO75409 117 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 NBEAP1P0C6P0 100 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 KRTDAPP60985 99 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 GNB4Q9HAV0 340 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 RPH3ALQ9UNE2 315 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 CRISP2P16562 243 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 HTR1DP28221 377 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 PLP1P60201 277 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 PLGLAQ15195 96 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 ZNF586Q9NXT0 402 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 CELSR1Q9NYQ6 3014 aa10.58□□□□□ -0.72
CCDC3-202ENST00000378839 PRR27Q6MZM9 219 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 RCHY1Q96PM5 261 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 DPM3Q9P2X0 92 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 COL12A1Q99715 3063 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 LOC105371242A0A075B767 164 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 SLC25A5P05141 298 aaKnown RBP10.57□□□□□ -0.72
CCDC3-202ENST00000378839 LYZP61626 148 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 TMEM183BQ1AE95 376 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 CMTM2Q8TAZ6 248 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 C17orf77Q96MU5 243 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 HSPB9Q9BQS6 159 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 SAMD10Q9BYL1 202 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 KLF12Q9Y4X4 402 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 BMPR1BO00238 502 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 NDPQ00604 133 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 KIR3DL3Q8N743 410 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 MLST8Q9BVC4 326 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 NAT8BQ9UHF3 227 aa10.57□□□□□ -0.72
CCDC3-202ENST00000378839 CNIH1O95406 144 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 PTTG1IPP53801 180 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 SLAQ13239 276 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 ASCL2Q99929 193 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 SLC25A39Q9BZJ4 359 aaPredicted RBP10.56□□□□□ -0.72
CCDC3-202ENST00000378839 NBR2O15453 112 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 ESDP10768 282 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 RAB4AP20338 218 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 EXOC3-AS1Q8N2X6 119 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 RNF5Q99942 180 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 Q9H3A6 140 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 PRORYQ9H606 182 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 MRPL27Q9P0M9 148 aaKnown RBP10.56□□□□□ -0.72
CCDC3-202ENST00000378839 HIVEP3Q5T1R4 2406 aa10.56□□□□□ -0.72
CCDC3-202ENST00000378839 TRAV8-1A0A0A6YYK1 113 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 ZNF785A8K8V0 405 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 NDUFA3O95167 84 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 NUP35Q8NFH5 326 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 NPBQ8NG41 125 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 MED13LQ71F56 2210 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 IZUMO1RA6ND01 250 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 PRTN3P24158 256 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 Q0VG73 95 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 FAM231DQ6ZW35 169 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 VMO1Q7Z5L0 202 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 HIGD1AQ9Y241 93 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 TOX4O94842 621 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 BRS3P32247 399 aa10.55□□□□□ -0.72
CCDC3-202ENST00000378839 F8W735 103 aaPredicted RBP10.54□□□□□ -0.72
CCDC3-202ENST00000378839 IGLV2-11P01706 119 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 AMY1AP04745 511 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 HINT1P49773 126 aaPredicted RBP10.54□□□□□ -0.72
CCDC3-202ENST00000378839 DTX2Q86UW9 622 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 C22orf15Q8WYQ4 148 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 FANCD2OSQ96PS1 177 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 TXN2Q99757 166 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 SPTBN1Q01082 2364 aaKnown RBP10.54□□□□□ -0.72
CCDC3-202ENST00000378839 TRBV9A0A0B4J1U6 114 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 M0R1W7 72 aa10.54□□□□□ -0.72
CCDC3-202ENST00000378839 TCRAP04437 139 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms