RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 M0R2Z0 102 aa11.36□□□□□ -0.59
CD48-201ENST00000368045 COX7A1P24310 79 aa11.36□□□□□ -0.59
CD48-201ENST00000368045 TCF24Q7RTU0 167 aa11.36□□□□□ -0.59
CD48-201ENST00000368045 S100A7AQ86SG5 101 aa11.36□□□□□ -0.59
CD48-201ENST00000368045 LYPD1Q8N2G4 141 aa11.36□□□□□ -0.59
CD48-201ENST00000368045 MUC15Q8N387 334 aa11.36□□□□□ -0.59
CD48-201ENST00000368045 SCNM1Q9BWG6 230 aa11.36□□□□□ -0.59
CD48-201ENST00000368045 RP1L1Q8IWN7 2480 aaPredicted RBP11.35□□□□□ -0.59
CD48-201ENST00000368045 LIPFP07098 398 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 IGLC2P0DOY2 106 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 IGLC3P0DOY3 106 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 PLGLAQ15195 96 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 PRR30Q53SZ7 412 aaPredicted RBP11.35□□□□□ -0.59
CD48-201ENST00000368045 ASPHD1Q5U4P2 390 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 C16orf54Q6UWD8 224 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 LINC00322Q6ZN03 302 aaPredicted RBP11.35□□□□□ -0.59
CD48-201ENST00000368045 CHCHD1Q96BP2 118 aaKnown RBP11.35□□□□□ -0.59
CD48-201ENST00000368045 SHANK2-AS3Q9BTD1 123 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 SSBP4Q9BWG4 385 aaPredicted RBP11.35□□□□□ -0.59
CD48-201ENST00000368045 WNT10AQ9GZT5 417 aa11.35□□□□□ -0.59
CD48-201ENST00000368045 NAV3Q8IVL0 2385 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 K7ENP7 123 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 IGKV1-17P01599 117 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 APELAP0DMC3 54 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 BTF3P20290 206 aaKnown RBP11.34□□□□□ -0.59
CD48-201ENST00000368045 GAGE1Q13065 139 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 COL5A1-AS1Q5SY13 56 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 LEMD1Q68G75 181 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 RNASEKQ6P5S7 137 aaKnown RBP11.34□□□□□ -0.59
CD48-201ENST00000368045 OR2D3Q8NGH3 330 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 GTSF1Q8WW33 167 aa11.34□□□□□ -0.59
CD48-201ENST00000368045 H3BRN7 92 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 GPR6P46095 362 aaPredicted RBP11.33□□□□□ -0.59
CD48-201ENST00000368045 ZNF124Q15973 351 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 ZNF672Q499Z4 452 aaPredicted RBP11.33□□□□□ -0.59
CD48-201ENST00000368045 BPIFA4PQ86YQ2 179 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 TMEM75Q8N9X5 138 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 OR4F17Q8NGA8 305 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 OR11H6Q8NGC7 330 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 SGK494Q96LW2 274 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 GSX1Q9H4S2 264 aaPredicted RBP11.33□□□□□ -0.59
CD48-201ENST00000368045 C1RLQ9NZP8 487 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 ZFP30Q9Y2G7 519 aa11.33□□□□□ -0.59
CD48-201ENST00000368045 TRBV19A0A075B6N1 114 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 LYNX1G3V0Z9 82 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 K7EIM0 57 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 HAX1O00165 279 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 TIMM23O14925 209 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 CNIH1O95406 144 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 LYNX1P0DP58 116 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 ZNF25P17030 456 aaPredicted RBP11.33□□□□□ -0.6
CD48-201ENST00000368045 HTR1DP28221 377 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 CEACAM3P40198 252 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 FOXA3P55318 350 aaPredicted RBP11.33□□□□□ -0.6
CD48-201ENST00000368045 NPBQ8NG41 125 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 PGLYRP4Q96LB8 373 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 NDFIP1Q9BT67 221 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 RAB1BQ9H0U4 201 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 DPM3Q9P2X0 92 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 ONECUT1Q9UBC0 465 aa11.33□□□□□ -0.6
CD48-201ENST00000368045 TRAV9-2A0A087WT02 112 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 K7EQM0 130 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 NBR2O15453 112 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 NDUFA3O95167 84 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 IGLV2-11P01706 119 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 COL8A1P27658 744 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 DLX1P56177 255 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 EBLN2Q6P2I7 272 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 GOLT1AQ6ZVE7 132 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 LHFPL4Q7Z7J7 247 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 TXN2Q99757 166 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 ZFHX4Q86UP3 3567 aa11.32□□□□□ -0.6
CD48-201ENST00000368045 TRAV30A0A087WSZ9 112 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 A0A1B0GW15 77 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 C2orf70A6NJV1 201 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 H3BTX0 84 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 M0R1W7 72 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 HNRNPA3P51991 378 aaKnown RBP11.31□□□□□ -0.6
CD48-201ENST00000368045 ZNF48Q96MX3 618 aaPredicted RBP11.31□□□□□ -0.6
CD48-201ENST00000368045 LPAR2Q9HBW0 351 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 LOC102724200A0A096LPH7 203 aaPredicted RBP11.31□□□□□ -0.6
CD48-201ENST00000368045 CHEK1O14757 476 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 OR5AL1P0C617 328 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 G0S2P27469 103 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 Q6ZN92 141 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 LINC01560Q8TB33 94 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 TIMD4Q96H15 378 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 URB1-AS1Q96HZ7 61 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 TMEM208Q9BTX3 173 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 TMEM70Q9BUB7 260 aa11.31□□□□□ -0.6
CD48-201ENST00000368045 MRPS16Q9Y3D3 137 aaKnown RBP11.31□□□□□ -0.6
CD48-201ENST00000368045 WI2-2373I1.2A0A1W2PRP0 233 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 DLEU1O43261 78 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 FOSL1P15407 271 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 Q6AWC8 147 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 PRNTQ86SH4 94 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 EXOC3-AS1Q8N2X6 119 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 GATD1Q8NB37 220 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 CFHR4Q92496 578 aa11.3□□□□□ -0.6
CD48-201ENST00000368045 RNF125Q96EQ8 232 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms