RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 PAX8Q06710 450 aa7.74□□□□□ -1.17
VPS13A-203ENST00000360280 IGFBP3P17936 291 aaPredicted RBP7.74□□□□□ -1.17
VPS13A-203ENST00000360280 EGR2P11161 476 aaPredicted RBP7.74□□□□□ -1.17
VPS13A-203ENST00000360280 A0A1W2PRX2 142 aa7.74□□□□□ -1.17
VPS13A-203ENST00000360280 FGF16O43320 207 aa7.74□□□□□ -1.17
VPS13A-203ENST00000360280 C9orf50Q5SZB4 431 aa7.74□□□□□ -1.17
VPS13A-203ENST00000360280 TMEM133Q9H2Q1 129 aa7.74□□□□□ -1.17
VPS13A-203ENST00000360280 LINC01590Q5TEZ4 76 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 IMMP1LQ96LU5 166 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 RNF126Q9BV68 326 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 NLRC5Q86WI3 1866 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 PYYP10082 97 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 ZNF625Q96I27 306 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-203ENST00000360280 TICRRQ7Z2Z1 1910 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 AGMATQ9BSE5 352 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 NABP1Q96AH0 204 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 ZNF362Q5T0B9 420 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-203ENST00000360280 COLCA1Q6ZS62 124 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 CEACAM1P13688 526 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 RPP25Q9BUL9 199 aaKnown RBP7.73□□□□□ -1.17
VPS13A-203ENST00000360280 LSM4Q9Y4Z0 139 aaKnown RBP7.73□□□□□ -1.17
VPS13A-203ENST00000360280 ZNF114Q8NC26 417 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 GFRA4Q9GZZ7 299 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 IGHV2OR16-5A0A0B4J2B6 119 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 COL18A1P39060 1754 aa7.73□□□□□ -1.17
VPS13A-203ENST00000360280 KIF26AQ9ULI4 1882 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-203ENST00000360280 GATA2P23769 480 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-203ENST00000360280 IGHG3P01860 377 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 NAA38Q9BRA0 125 aaKnown RBP7.72□□□□□ -1.17
VPS13A-203ENST00000360280 LY96Q9Y6Y9 160 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 PCOLCEQ15113 449 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 MORN2Q502X0 79 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 C1QTNF5Q9BXJ0 243 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 A0A0G2JK05 382 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 IL18BPO95998 194 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 ZNF138P52744 262 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 TRIOBPQ9H2D6 2365 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 IGHV3-11P01762 117 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 LINC00477Q96M19 166 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 RPUSD1Q9UJJ7 312 aaKnown RBP7.72□□□□□ -1.17
VPS13A-203ENST00000360280 EML5Q05BV3 1969 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 ZNF876PQ49A33 203 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 SMRP1Q8NCR6 262 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 TMEM126AQ9H061 195 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 TRGV1A0A0A0MS02 117 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 LINC00271P0C7V0 271 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 SRSF3P84103 164 aaKnown RBP7.72□□□□□ -1.17
VPS13A-203ENST00000360280 C7orf69Q9H7B7 122 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 IGHG4P01861 327 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 NKAPP1Q8N9T2 125 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 NRTNQ99748 197 aa7.72□□□□□ -1.17
VPS13A-203ENST00000360280 LYPD1Q8N2G4 141 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 TMEM158Q8WZ71 300 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 DEPPQ9NTK1 212 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 GAGE12JA6NER3 117 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 GAGE1Q13065 139 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 GAGE4Q13068 117 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 GAGE5Q13069 117 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 GAGE6Q13070 117 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 hDV102S1A0JD36 115 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 CXCL1P09341 107 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 LINC01551Q86U37 167 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 LY6G5BQ8NDX9 201 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 NUP35Q8NFH5 326 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 CTHRC1Q96CG8 243 aa7.71□□□□□ -1.17
VPS13A-203ENST00000360280 NUP210Q8TEM1 1887 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-203ENST00000360280 TRAV41A0A0B4J266 112 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 COL11A2P13942 1736 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-203ENST00000360280 CELA2AP08217 269 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 PPIFP30405 207 aaKnown RBP7.71□□□□□ -1.18
VPS13A-203ENST00000360280 SLC22A18ASQ8N1D0 253 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 CSTL1Q9H114 145 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 SRRM4A7MD48 611 aaKnown RBP7.71□□□□□ -1.18
VPS13A-203ENST00000360280 COLCA2A8K830 154 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 IGKV2-40A0A087WW87 121 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-203ENST00000360280 TRBV7-1A0A0A6YYK4 115 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 IGKV2D-40P01614 121 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-203ENST00000360280 SPXQ9BT56 116 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 MMP23AO75900 390 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 CECR9P0C854 216 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 C1QL2Q7Z5L3 287 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 C1orf159Q96HA4 380 aa7.71□□□□□ -1.18
VPS13A-203ENST00000360280 SPAARA0A1B0GVQ0 90 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 REPIN1Q9BWE0 567 aaKnown RBP7.7□□□□□ -1.18
VPS13A-203ENST00000360280 NCOR1O75376 2440 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 DMRTC2Q8IXT2 367 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-203ENST00000360280 POU2AF1Q16633 256 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 C1orf43Q9BWL3 253 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 LOC101059948A0A1B0GTJ6 334 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 C9orf139Q6ZV77 190 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 R3HDMLQ9H3Y0 253 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 MBNL3Q9NUK0 354 aaKnown RBP7.7□□□□□ -1.18
VPS13A-203ENST00000360280 CEACAM8P31997 349 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-203ENST00000360280 SLAQ13239 276 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 RBM3P98179 157 aaKnown RBP7.7□□□□□ -1.18
VPS13A-203ENST00000360280 SRSF7Q16629 238 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS13A-203ENST00000360280 LYZL1Q6UWQ5 148 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 TANC2Q9HCD6 1990 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 ZNF561-AS1K7EIQ3 104 aa7.7□□□□□ -1.18
VPS13A-203ENST00000360280 GREM1O60565 184 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms