RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 FZR1Q9UM11 496 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 RNF24Q9Y225 148 aa12.77□□□□□ -0.36
HMGA1-202ENST00000347617 MOB3BQ86TA1 216 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 CHTOPQ9Y3Y2 248 aaKnown RBP12.76□□□□□ -0.37
HMGA1-202ENST00000347617 TLN1Q9Y490 2541 aaKnown RBP12.76□□□□□ -0.37
HMGA1-202ENST00000347617 PIEZO2Q9H5I5 2752 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.76□□□□□ -0.37
HMGA1-202ENST00000347617 GAGE10A6NGK3 116 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 VWC2LB2RUY7 222 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 NPIPB6E9PJ23 425 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 H3BRM9 83 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 CORTO00230 105 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 LTAP01374 205 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 APOA2P02652 100 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 PYYP10082 97 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 TMEM97Q5BJF2 176 aa12.76□□□□□ -0.37
HMGA1-202ENST00000347617 SLC25A48Q6ZT89 311 aaKnown RBP12.76□□□□□ -0.37
HMGA1-202ENST00000347617 BOD1L1Q8NFC6 3051 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 IGF2RP11717 2491 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 RP1L1Q8IWN7 2480 aaPredicted RBP12.75□□□□□ -0.37
HMGA1-202ENST00000347617 TRBV6-1A0A0K0K1D8 114 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 C7orf71A4D174 169 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 C22orf46C9J442 243 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 HTR1DP28221 377 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 CSN1S1P47710 185 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 ALKBH2Q6NS38 261 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 VSTM2AQ8TAG5 236 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 FAM222BQ8WU58 562 aa12.75□□□□□ -0.37
HMGA1-202ENST00000347617 SIVA1O15304 175 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 FSTL3O95633 263 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 LHBP01229 141 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 SAA1P0DJI8 122 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-202ENST00000347617 CT45A6P0DMU7 189 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 CT45A5P0DMU8 189 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 CT45A7P0DMV0 189 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 MYOD1P15172 320 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 PSMG4Q5JS54 123 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 MORN5Q5VZ52 161 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 UFSP1Q6NVU6 142 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 PATE2Q6UY27 113 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 WFDC8Q8IUA0 241 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 POLEQ07864 2286 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 DYSFO75923 2080 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 C9orf118A6NHY6 69 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 SH2D7A6NKC9 451 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-202ENST00000347617 FOXA3P55318 350 aaPredicted RBP12.74□□□□□ -0.37
HMGA1-202ENST00000347617 TMEM177Q53S58 311 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 ZNF841Q6ZN19 808 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 ZCCHC24Q8N2G6 241 aaKnown RBP12.74□□□□□ -0.37
HMGA1-202ENST00000347617 OR10X1Q8NGY0 326 aa12.74□□□□□ -0.37
HMGA1-202ENST00000347617 RNASE6Q93091 150 aaKnown RBP12.74□□□□□ -0.37
HMGA1-202ENST00000347617 BSNQ9UPA5 3926 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 ATMQ13315 3056 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 TRAV8-6A0A0B4J262 113 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 PGPA6NDG6 321 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 CCL21O00585 134 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 MOSP00540 346 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 COL8A2P25067 703 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 HOXA4Q00056 320 aaPredicted RBP12.73□□□□□ -0.37
HMGA1-202ENST00000347617 LINC00173Q6ZV60 143 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 FER1L6-AS1Q8NA97 138 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 OR9G4Q8NGQ1 327 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 TMEM167AQ8TBQ9 72 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 PGLYRP4Q96LB8 373 aa12.73□□□□□ -0.37
HMGA1-202ENST00000347617 RPUSD1Q9UJJ7 312 aaKnown RBP12.73□□□□□ -0.37
HMGA1-202ENST00000347617 SPENQ96T58 3664 aaKnown RBP12.73□□□□□ -0.37
HMGA1-202ENST00000347617 CIDEAO60543 219 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 PAX2Q02962 417 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 BSPH1Q075Z2 132 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 RIGQ13278 110 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 C16orf54Q6UWD8 224 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 ZNF833PQ6ZTB9 187 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 C2orf91Q6ZV80 131 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 LINC00305Q7Z4B0 112 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 ZNRF1Q8ND25 227 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 OR5A1Q8NGJ0 315 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 OR10AG1Q8NH19 301 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 GTSF1Q8WW33 167 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 MEGF9Q9H1U4 602 aa12.72□□□□□ -0.37
HMGA1-202ENST00000347617 A0A087X0K7 114 aa12.71□□□□□ -0.37
HMGA1-202ENST00000347617 TMEM238C9JI98 176 aa12.71□□□□□ -0.37
HMGA1-202ENST00000347617 IGHV3-7P01780 117 aa12.71□□□□□ -0.37
HMGA1-202ENST00000347617 Q6AWC8 147 aa12.71□□□□□ -0.37
HMGA1-202ENST00000347617 VHLLQ6RSH7 139 aa12.71□□□□□ -0.37
HMGA1-202ENST00000347617 OR5AN1Q8NGI8 311 aa12.71□□□□□ -0.37
HMGA1-202ENST00000347617 AP5S1Q9NUS5 200 aa12.71□□□□□ -0.37
HMGA1-202ENST00000347617 IGKV1D-37A0A075B6S9 117 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 G3V4G9 280 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 K7EP34 96 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 IGHV1-46P01743 117 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 NBEAP1P0C6P0 100 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 SMIM17P0DL12 118 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 GNG5P63218 68 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 HSD52Q0P140 79 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 ADIPOQQ15848 244 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 MLANAQ16655 118 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 OR4X2Q8NGF9 303 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 LEAP2Q969E1 77 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 TRGV9Q99603 122 aa12.71□□□□□ -0.38
HMGA1-202ENST00000347617 ZNF747Q9BV97 191 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms