RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 LYPD1Q8N2G4 141 aa18.9■□□□□ 0.62
NPAS3-201ENST00000346562 UBE2E2Q96LR5 201 aa18.9■□□□□ 0.62
NPAS3-201ENST00000346562 LCN12Q6JVE5 192 aa18.89■□□□□ 0.62
NPAS3-201ENST00000346562 RHPN1-AS1Q9BWJ2 59 aa18.89■□□□□ 0.61
NPAS3-201ENST00000346562 LEPROTO15243 131 aa18.89■□□□□ 0.61
NPAS3-201ENST00000346562 PCP4P48539 62 aa18.89■□□□□ 0.61
NPAS3-201ENST00000346562 A0A087WV48 116 aa18.88■□□□□ 0.61
NPAS3-201ENST00000346562 PSPNO60542 156 aa18.88■□□□□ 0.61
NPAS3-201ENST00000346562 TNFSF13O75888 250 aa18.88■□□□□ 0.61
NPAS3-201ENST00000346562 DAZ1Q9NQZ3 744 aaKnown RBP18.88■□□□□ 0.61
NPAS3-201ENST00000346562 SRSF8Q9BRL6 282 aaKnown RBP18.88■□□□□ 0.61
NPAS3-201ENST00000346562 GSN-AS1Q9NRJ2 163 aa18.88■□□□□ 0.61
NPAS3-201ENST00000346562 IGKV1-27A0A075B6S5 117 aa18.88■□□□□ 0.61
NPAS3-201ENST00000346562 TMEM249Q2WGJ8 235 aa18.88■□□□□ 0.61
NPAS3-201ENST00000346562 SP5Q6BEB4 398 aaPredicted RBP18.88■□□□□ 0.61
NPAS3-201ENST00000346562 TDRD6O60522 2096 aaKnown RBP18.88■□□□□ 0.61
NPAS3-201ENST00000346562 SIGLEC9Q9Y336 463 aa18.88■□□□□ 0.61
NPAS3-201ENST00000346562 MESP1Q9BRJ9 268 aa18.87■□□□□ 0.61
NPAS3-201ENST00000346562 NEUROG3Q9Y4Z2 214 aa18.87■□□□□ 0.61
NPAS3-201ENST00000346562 BRCA1P38398 1863 aaKnown RBP18.87■□□□□ 0.61
NPAS3-201ENST00000346562 H0YIZ8 118 aa18.87■□□□□ 0.61
NPAS3-201ENST00000346562 TMEM242Q9NWH2 141 aa18.87■□□□□ 0.61
NPAS3-201ENST00000346562 INS-IGF2F8WCM5 200 aa18.87■□□□□ 0.61
NPAS3-201ENST00000346562 PRB4P10163 310 aaPredicted RBP18.87■□□□□ 0.61
NPAS3-201ENST00000346562 SRSF3P84103 164 aaKnown RBP18.87■□□□□ 0.61
NPAS3-201ENST00000346562 CSTL1Q9H114 145 aa18.87■□□□□ 0.61
NPAS3-201ENST00000346562 BPESC1Q9GZL8 116 aa18.87■□□□□ 0.61
NPAS3-201ENST00000346562 FGF16O43320 207 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 COL8A2P25067 703 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 C1orf159Q96HA4 380 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 ZNF329Q86UD4 541 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 ZNF362Q5T0B9 420 aaPredicted RBP18.86■□□□□ 0.61
NPAS3-201ENST00000346562 SAMD5Q5TGI4 173 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 RFNGQ9Y644 331 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 SCN8AQ9UQD0 1980 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 AMBPP02760 352 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 C17orf82Q86X59 251 aaPredicted RBP18.86■□□□□ 0.61
NPAS3-201ENST00000346562 MSRB2Q9Y3D2 182 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 RALGAPA2Q2PPJ7 1873 aa18.86■□□□□ 0.61
NPAS3-201ENST00000346562 MYMXA0A1B0GTQ4 84 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 IGHG3P01860 377 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 HAPLN4Q86UW8 402 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 Q6ZS92 163 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 GFI1Q99684 422 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 ARID2Q68CP9 1835 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 TRBV6-6A0A0A6YYG2 114 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 MEGF9Q9H1U4 602 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 TRAV3A0A0B4J244 114 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 SAA4P35542 130 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 GAGE13Q4V321 117 aa18.85■□□□□ 0.61
NPAS3-201ENST00000346562 KLF17Q5JT82 389 aaPredicted RBP18.85■□□□□ 0.61
NPAS3-201ENST00000346562 BRWD3Q6RI45 1802 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 ANAPC13Q9BS18 74 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 TAF1LQ8IZX4 1826 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 VWC2LB2RUY7 222 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 BMPERQ8N8U9 685 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 PTPRFP10586 1907 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 SBF2Q86WG5 1849 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 LINC01619G3V211 115 aa18.84■□□□□ 0.61
NPAS3-201ENST00000346562 Q5PR19 223 aa18.83■□□□□ 0.61
NPAS3-201ENST00000346562 ITGB1BP1O14713 200 aa18.83■□□□□ 0.61
NPAS3-201ENST00000346562 MSMBP08118 114 aa18.83■□□□□ 0.61
NPAS3-201ENST00000346562 DEFB130BP0DP73 79 aa18.83■□□□□ 0.61
NPAS3-201ENST00000346562 DEFB130AP0DP74 79 aa18.83■□□□□ 0.61
NPAS3-201ENST00000346562 RNF223E7ERA6 249 aa18.83■□□□□ 0.6
NPAS3-201ENST00000346562 Q8TAT8 98 aa18.83■□□□□ 0.6
NPAS3-201ENST00000346562 AGMATQ9BSE5 352 aa18.83■□□□□ 0.6
NPAS3-201ENST00000346562 MST1P26927 711 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 TRAV1-1A0A0B4J248 108 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 RPRMLQ8N4K4 120 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 C14orf178Q8N769 122 aaPredicted RBP18.82■□□□□ 0.6
NPAS3-201ENST00000346562 LY96Q9Y6Y9 160 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 CLPSP04118 112 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 SYNJ2BPP57105 145 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 LHFPL1Q86WI0 220 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 KLF12Q9Y4X4 402 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 LOC285556D6RIA3 1793 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 A0A1B0GW64 132 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 GAGE2EQ4V326 116 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 GAGE2DQ9UEU5 116 aa18.82■□□□□ 0.6
NPAS3-201ENST00000346562 Q6P435 159 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 NDUFAF3Q9BU61 184 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BKO60814 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BJP06899 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BOP23527 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BBP33778 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BDP58876 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H4AP62805 103 aaKnown RBP18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BCP62807 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 SRSF4Q08170 494 aaKnown RBP18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST2H2BEQ16778 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST2H2BFQ5QNW6 126 aaPredicted RBP18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BHQ93079 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BNQ99877 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 HIST1H2BMQ99879 126 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 NMSQ5H8A3 153 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 DNAJC30Q96LL9 226 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 PNRC2Q9NPJ4 139 aaKnown RBP18.81■□□□□ 0.6
NPAS3-201ENST00000346562 IGKV1D-17A0A075B6S4 117 aa18.81■□□□□ 0.6
NPAS3-201ENST00000346562 PRTN3P24158 256 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms