RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HLA-DQA1P01909 254 aa9.69□□□□□ -0.86
USP1-201ENST00000339950 IL4P05112 153 aa9.69□□□□□ -0.86
USP1-201ENST00000339950 RBPJQ06330 500 aa9.69□□□□□ -0.86
USP1-201ENST00000339950 SAPCD1Q5SSQ6 148 aa9.69□□□□□ -0.86
USP1-201ENST00000339950 STPG4Q8N801 248 aa9.69□□□□□ -0.86
USP1-201ENST00000339950 OR52E5Q8NH55 327 aa9.69□□□□□ -0.86
USP1-201ENST00000339950 FBXL7Q9UJT9 491 aa9.69□□□□□ -0.86
USP1-201ENST00000339950 PPIAL4CA0A0B4J2A2 164 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 IGHV1-69-2A0A0G2JMI3 117 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 PPIAL4GP0DN37 164 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 GCSHP23434 173 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 CA7P43166 264 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 PRCDQ00LT1 54 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 IGHG3P01860 377 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 C3orf79P0CE67 100 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 RNASE2P10153 161 aaKnown RBP9.68□□□□□ -0.86
USP1-201ENST00000339950 CEACAM8P31997 349 aaPredicted RBP9.68□□□□□ -0.86
USP1-201ENST00000339950 NUDT10Q8NFP7 164 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 VSTM2AQ8TAG5 236 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 NUDT11Q96G61 164 aa9.68□□□□□ -0.86
USP1-201ENST00000339950 NAV2Q8IVL1 2488 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 J3QW42 95 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 PSG1P11464 419 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 MBNL2Q5VZF2 373 aaKnown RBP9.67□□□□□ -0.86
USP1-201ENST00000339950 SFTA2Q6UW10 78 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 hDV102S1A0JD36 115 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 ZNF324O75467 553 aaPredicted RBP9.67□□□□□ -0.86
USP1-201ENST00000339950 MT-ND6P03923 174 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 SLAQ13239 276 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 TPTE2P1Q5T6R2 138 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 PERPQ96FX8 193 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 ZC2HC1AQ96GY0 325 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 CDC42EP3Q9UKI2 254 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 MTORP42345 2549 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 ORM1P02763 201 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 PLA2G2CQ5R387 149 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 ARL6IP6Q8N6S5 226 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 C18orf15Q96N68 181 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 UBTD1Q9HAC8 227 aa9.67□□□□□ -0.86
USP1-201ENST00000339950 A0A1W2PPI3 338 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 ZNF785A8K8V0 405 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 J3QR89 54 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 BTF3P20290 206 aaKnown RBP9.66□□□□□ -0.86
USP1-201ENST00000339950 FOXL1Q12952 345 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 ZNF788Q6ZQV5 615 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 SCNM1Q9BWG6 230 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 C1orf162Q8NEQ5 155 aaPredicted RBP9.66□□□□□ -0.86
USP1-201ENST00000339950 TMEM70Q9BUB7 260 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 HIGD1AQ9Y241 93 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 A0A1B0GWJ7 208 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 H3BUT2 72 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 TBR1Q16650 682 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 C12orf54Q6X4T0 127 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 RNASE8Q8TDE3 154 aaKnown RBP9.66□□□□□ -0.86
USP1-201ENST00000339950 RNASE6Q93091 150 aaKnown RBP9.66□□□□□ -0.86
USP1-201ENST00000339950 PYGO2Q9BRQ0 406 aa9.66□□□□□ -0.86
USP1-201ENST00000339950 H0YJW9 148 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 LINC00614P0C842 121 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 OR4F17Q8NGA8 305 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 A0A087X0K7 114 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 HIST1H1EP10412 219 aaKnown RBP9.65□□□□□ -0.86
USP1-201ENST00000339950 PRRX1P54821 245 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 C17orf77Q96MU5 243 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 Q9H3A6 140 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 LINC00312Q9Y6C7 94 aa9.65□□□□□ -0.86
USP1-201ENST00000339950 CLEC3BP05452 202 aa9.65□□□□□ -0.87
USP1-201ENST00000339950 RPL15P61313 204 aaKnown RBP9.65□□□□□ -0.87
USP1-201ENST00000339950 C1orf174Q8IYL3 243 aa9.65□□□□□ -0.87
USP1-201ENST00000339950 TMEM14BQ9NUH8 114 aa9.65□□□□□ -0.87
USP1-201ENST00000339950 TIMM23O14925 209 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 CSN1S1P47710 185 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 NUP35Q8NFH5 326 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 FAM57AQ8TBR7 257 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 RNASEH2CQ8TDP1 164 aaKnown RBP9.64□□□□□ -0.87
USP1-201ENST00000339950 F2RL2O00254 374 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 Q8TAT8 98 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 SFXN3Q9BWM7 321 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 TET2Q6N021 2002 aaPredicted RBP9.64□□□□□ -0.87
USP1-201ENST00000339950 TM4SF5O14894 197 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 SMAGPQ0VAQ4 97 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 OSR1Q8TAX0 266 aaPredicted RBP9.64□□□□□ -0.87
USP1-201ENST00000339950 UFC1Q9Y3C8 167 aa9.64□□□□□ -0.87
USP1-201ENST00000339950 K7EQM0 130 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 NDUFS7O75251 213 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 GPX1P07203 203 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 UBE2V1Q13404 147 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 SLC25A48Q6ZT89 311 aaKnown RBP9.63□□□□□ -0.87
USP1-201ENST00000339950 C5orf17Q8NAS9 161 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 TIMD4Q96H15 378 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 CTSZQ9UBR2 303 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 V9GYV3 84 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 OR2T8A6NH00 312 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 IGLV1-44P01699 117 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 TSPOP30536 169 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 CENPVQ7Z7K6 275 aaPredicted RBP9.63□□□□□ -0.87
USP1-201ENST00000339950 WFDC12Q8WWY7 111 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 TXNDC17Q9BRA2 123 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 RNF114Q9Y508 228 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 A6NDN8 102 aa9.63□□□□□ -0.87
USP1-201ENST00000339950 MBD3L4A6NDZ8 208 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms