RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 MRAPQ8TCY5 172 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 IGHV1-8P0DP01 117 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 RPL32P62910 135 aaKnown RBP10.38□□□□□ -0.75
SDC3-201ENST00000336798 RUSC1-AS1Q66K80 236 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 C14orf178Q8N769 122 aaPredicted RBP10.38□□□□□ -0.75
SDC3-201ENST00000336798 MS4A6AQ9H2W1 248 aa10.38□□□□□ -0.75
SDC3-201ENST00000336798 PDCD11Q14690 1871 aaKnown RBP10.38□□□□□ -0.75
SDC3-201ENST00000336798 EFNA4P52798 201 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 RPL36AP83881 106 aaKnown RBP10.37□□□□□ -0.75
SDC3-201ENST00000336798 RPL36ALQ969Q0 106 aaKnown RBP10.37□□□□□ -0.75
SDC3-201ENST00000336798 TNFRSF6BO95407 300 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 MCRIP2Q9BUT9 160 aaKnown RBP10.37□□□□□ -0.75
SDC3-201ENST00000336798 ERCC8Q13216 396 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 RFNGQ9Y644 331 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 SEC16AO15027 2179 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 TEX43Q6ZNM6 134 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 TRAV9-1A0A075B6T8 112 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 TRAV8-1A0A0A6YYK1 113 aa10.37□□□□□ -0.75
SDC3-201ENST00000336798 A0A0G2JNJ9 132 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 CD59P13987 128 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 LINC00114Q6XXX2 140 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 ADAMTSL5Q6ZMM2 481 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 Q9UFV3 132 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 TUBGCP6Q96RT7 1819 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 IGHV3-16A0A0C4DH30 117 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 KNCNA6PVL3 124 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 RNF223E7ERA6 249 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 CGB3P0DN86 165 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 MRPS18CQ9Y3D5 142 aaKnown RBP10.36□□□□□ -0.75
SDC3-201ENST00000336798 CSTL1Q9H114 145 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 A0A1W2PRE2 83 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 F2Z2F3 143 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 SH2D1AO60880 128 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 GATA4P43694 442 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 CD177Q8N6Q3 437 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 PTPRFP10586 1907 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 SEC11AP67812 179 aa10.36□□□□□ -0.75
SDC3-201ENST00000336798 TMEM238C9JI98 176 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 SYNJ2BPP57105 145 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 C9orf153Q5TBE3 101 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 MSRB2Q9Y3D2 182 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 TSSC4Q9Y5U2 329 aaPredicted RBP10.35□□□□□ -0.75
SDC3-201ENST00000336798 TRAV8-3A0A0A6YYJ7 113 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 LGALS1P09382 135 aaKnown RBP10.35□□□□□ -0.75
SDC3-201ENST00000336798 COL8A2P25067 703 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 HGFACQ04756 655 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 NR2C2APQ86WQ0 139 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 BMPERQ8N8U9 685 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 TSKUQ8WUA8 353 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 SPXQ9BT56 116 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 F8VVB4 439 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 F8VWA3 439 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 LINC00271P0C7V0 271 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 TREML4Q6UXN2 200 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 TMEM178BH3BS89 294 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 SUMO4Q6EEV6 95 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 OSTCQ9NRP0 149 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 IGKV1-12A0A0C4DH73 117 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 hDV102S1A0JD36 115 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 IGKV1D-12P01611 117 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 GAGE1Q13065 139 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 ANAPC10Q9UM13 185 aa10.35□□□□□ -0.75
SDC3-201ENST00000336798 B4DSR2 109 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 CFHR1Q03591 330 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 LYPD2Q6UXB3 125 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 VWC2LB2RUY7 222 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 ZNF138P52744 262 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 UBR3Q6ZT12 1888 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 DSCR9P59020 149 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 FAM110DQ8TAY7 271 aaPredicted RBP10.34□□□□□ -0.75
SDC3-201ENST00000336798 STRCP1A6NGW2 1772 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 AZU1P20160 251 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 CSRP1P21291 193 aaKnown RBP10.34□□□□□ -0.75
SDC3-201ENST00000336798 SRSF8Q9BRL6 282 aaKnown RBP10.34□□□□□ -0.75
SDC3-201ENST00000336798 BPESC1Q9GZL8 116 aa10.34□□□□□ -0.75
SDC3-201ENST00000336798 PSPNO60542 156 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 CDKN1BP46527 198 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 UNQ6494/PRO21346Q6UXR6 183 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 MGST2Q99735 147 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 ABCA7Q8IZY2 2146 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 F5H768 121 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 H0YIZ8 118 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 MPV17L2Q567V2 206 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 TEX38Q6PEX7 206 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 ZNF114Q8NC26 417 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 LCN12Q6JVE5 192 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 A0A087X0K7 114 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 DKK1O94907 266 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 CGB7P0DN87 165 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 C2orf82Q6UX34 121 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 XCL2Q9UBD3 114 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 COL11A2P13942 1736 aaPredicted RBP10.33□□□□□ -0.76
SDC3-201ENST00000336798 PPBPP02775 128 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 HSD52Q0P140 79 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 SPSB3Q6PJ21 355 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 RASL10AQ92737 203 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 CHCHD1Q96BP2 118 aaKnown RBP10.33□□□□□ -0.76
SDC3-201ENST00000336798 ZNRD1Q9P1U0 126 aa10.33□□□□□ -0.76
SDC3-201ENST00000336798 ZFP36L1Q07352 338 aaKnown RBP10.32□□□□□ -0.76
SDC3-201ENST00000336798 GNB1LQ9BYB4 327 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms