RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PEX7O00628 323 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 LOXL1Q08397 574 aaPredicted RBP5.54□□□□□ -1.52
SF3B1-201ENST00000335508 PRSS57Q6UWY2 283 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 SRD5A3Q9H8P0 318 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 PTPRSQ13332 1948 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 TMEM189A5PLL7 270 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 HAX1O00165 279 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 MMP23AO75900 390 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 IGHV3-11P01762 117 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 CLEC19AQ6UXS0 136 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 GTF2H5Q6ZYL4 71 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 NHLRC2Q8NBF2 726 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 LY96Q9Y6Y9 160 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 FLNCQ14315 2725 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 TRBV9A0A0B4J1U6 114 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 A0A1B0GW64 132 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 EIF3GO75821 320 aaKnown RBP eCLIP5.54□□□□□ -1.52
SF3B1-201ENST00000335508 IGKV1-39P01597 117 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 IGKV1D-39P04432 117 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 PMCHP20382 165 aa5.54□□□□□ -1.52
SF3B1-201ENST00000335508 SRSF2Q01130 221 aaKnown RBP5.54□□□□□ -1.52
SF3B1-201ENST00000335508 FABP5P3A8MUU1 101 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 ZNF134P52741 427 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 MRPL23Q16540 153 aaKnown RBP5.53□□□□□ -1.52
SF3B1-201ENST00000335508 DAZ1Q9NQZ3 744 aaKnown RBP5.53□□□□□ -1.52
SF3B1-201ENST00000335508 OSTCQ9NRP0 149 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 YLPM1P49750 1951 aaKnown RBP5.53□□□□□ -1.52
SF3B1-201ENST00000335508 A0A1B0GV72 72 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 OVOL1O14753 267 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 CYTL1Q9NRR1 136 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 NOTCH1P46531 2555 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 LMO4P61968 165 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 OR10W1Q8NGF6 305 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 TMPRSS5Q9H3S3 457 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 SCGB1D1O95968 90 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 GPX1P07203 203 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 WT1-ASQ06250 92 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 FAM159AQ6UWV7 190 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 SNURFLB1AK76 121 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 TFF3Q07654 80 aa5.53□□□□□ -1.52
SF3B1-201ENST00000335508 IGHV3OR16-13A0A075B7E8 117 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 A0A087WWC5 75 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 IGHV3-74A0A0B4J1X5 117 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 C9JCJ5 164 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 H7C1H1 209 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 HIST1H1AQ02539 215 aaPredicted RBP5.52□□□□□ -1.53
SF3B1-201ENST00000335508 KLRD1Q13241 179 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM95Q3KNT9 176 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 ST6GALNAC6Q969X2 333 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 LINC00587B1AMM8 73 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 NPIPB6E9PJ23 425 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 CENPWQ5EE01 88 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 C5orf30Q96GV9 206 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 CENPVL3A0A0U1RRI6 287 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 MRPL54Q6P161 138 aaKnown RBP5.52□□□□□ -1.53
SF3B1-201ENST00000335508 LHFPL4Q7Z7J7 247 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 A0A1B0GUT8 65 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 PAX1P15863 534 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 GATA2P23769 480 aaPredicted RBP5.52□□□□□ -1.53
SF3B1-201ENST00000335508 SYT8Q8NBV8 401 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 EPDR1Q9UM22 224 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 COL5A1P20908 1838 aaPredicted RBP5.52□□□□□ -1.53
SF3B1-201ENST00000335508 KIAA1549LQ6ZVL6 1849 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 TRAV3A0A0B4J244 114 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 LINC01549A6NIU2 74 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 CBLN2Q8IUK8 224 aa5.52□□□□□ -1.53
SF3B1-201ENST00000335508 NPIPB5A8MRT5 1133 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 PPBPP02775 128 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 RPL15P61313 204 aaKnown RBP5.51□□□□□ -1.53
SF3B1-201ENST00000335508 KLF17Q5JT82 389 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-201ENST00000335508 MIR17HGQ75NE6 70 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 WFDC3Q8IUB2 231 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 NRN1Q9NPD7 142 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 PAX6P26367 422 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TFPI2P48307 235 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 LEMD1Q68G75 181 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 NUDT11Q96G61 164 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 C1QTNF4Q9BXJ3 329 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM191AQ9H0A3 160 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 SDF2L1Q9HCN8 221 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM242Q9NWH2 141 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 BAHCC1Q9P281 2608 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM89A2RUT3 159 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM86BQ8N661 226 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 LY6G5BQ8NDX9 201 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 ISOC2Q96AB3 205 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 PHLDA3Q9Y5J5 127 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TGIF2-C20orf24A0A0A6YYL0 155 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 PIP4P2Q8N4L2 257 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 VPREB3Q9UKI3 123 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 DSPP15924 2871 aaKnown RBP5.51□□□□□ -1.53
SF3B1-201ENST00000335508 PRNTQ86SH4 94 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TMEM219Q86XT9 240 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 FMC1Q96HJ9 113 aa5.51□□□□□ -1.53
SF3B1-201ENST00000335508 ZNF48Q96MX3 618 aaPredicted RBP5.51□□□□□ -1.53
SF3B1-201ENST00000335508 TRBV24-1A0A075B6N3 115 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 ANOS1P23352 680 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 PEF1Q9UBV8 284 aaKnown RBP5.5□□□□□ -1.53
SF3B1-201ENST00000335508 PAX9P55771 341 aa5.5□□□□□ -1.53
SF3B1-201ENST00000335508 DUX4L9Q6RFH8 374 aaPredicted RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms