RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 FAM231DQ6ZW35 169 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 C5orf17Q8NAS9 161 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 MBD6Q96DN6 1003 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 ATG101Q9BSB4 218 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 ZNF586Q9NXT0 402 aa11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 MRPL27Q9P0M9 148 aaKnown RBP11.74□□□□□ -0.53
CLCNKA-201ENST00000331433 BAGE3Q86Y29 109 aa11.73□□□□□ -0.53
CLCNKA-201ENST00000331433 ITLN2Q8WWU7 325 aaPredicted RBP11.73□□□□□ -0.53
CLCNKA-201ENST00000331433 KLF12Q9Y4X4 402 aa11.73□□□□□ -0.53
CLCNKA-201ENST00000331433 ZFHX3Q15911 3703 aa11.73□□□□□ -0.53
CLCNKA-201ENST00000331433 IZUMO1RA6ND01 250 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 A6NNC1 897 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 TCRAP04437 139 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 AMY1AP04745 511 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 PKIAP61925 76 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 RPL19P84098 196 aaKnown RBP11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 WDR73Q6P4I2 378 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 C1orf122Q6ZSJ8 110 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 EXOC3-AS1Q8N2X6 119 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 MT-ND6P03923 174 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 CD33P20138 364 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 GNLYP22749 145 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 CCDC144NLQ6NUI1 221 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 UNQ6494/PRO21346Q6UXR6 183 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 ARPC1AQ92747 370 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 GPR82Q96P67 336 aa11.72□□□□□ -0.53
CLCNKA-201ENST00000331433 IL4P05112 153 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 PRB4P10163 310 aaPredicted RBP11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 ZNF562Q6V9R5 426 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 LINC00322Q6ZN03 302 aaPredicted RBP11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 KIR3DL3Q8N743 410 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 MS4A10Q96PG2 267 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 FANCD2OSQ96PS1 177 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 SIRPDQ9H106 197 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 GNB4Q9HAV0 340 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 TRAV8-1A0A0A6YYK1 113 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 TSTD3H0UI37 97 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 ZNF664Q8N3J9 261 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 NUP35Q8NFH5 326 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 GRAMD2BQ96HH9 432 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 C17orf77Q96MU5 243 aa11.71□□□□□ -0.53
CLCNKA-201ENST00000331433 HIST1H1EP10412 219 aaKnown RBP11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 SFTPCP11686 197 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 EFNA4P52798 201 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 BCL6BQ8N143 479 aaPredicted RBP11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 Q8N6K4 173 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 ZNF491Q8N8L2 437 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 RNF125Q96EQ8 232 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 MLST8Q9BVC4 326 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 TMEM14CQ9P0S9 112 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 IGLV11-55A0A075B6I3 123 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 BMPR1BO00238 502 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 SCGB1D1O95968 90 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 TOMM40O96008 361 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 LTAP01374 205 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 TMEM11P17152 192 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 Q0VG73 95 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 USF2Q15853 346 aaPredicted RBP11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 Q71RC1 249 aaPredicted RBP11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 FMC1Q96HJ9 113 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 NEU1Q99519 415 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 SHANK2-AS3Q9BTD1 123 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 BPESC1Q9GZL8 116 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 ZNF331Q9NQX6 463 aaPredicted RBP11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 CFAP46Q8IYW2 2715 aa11.7□□□□□ -0.54
CLCNKA-201ENST00000331433 HIGD1CA8MV81 97 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 GNG7O60262 68 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 IGHV3-23P01764 117 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 HLA-DQA1P01909 254 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 DDTP30046 118 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 DEFA6Q01524 100 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 SLAQ13239 276 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 MINOS1Q5TGZ0 78 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 TMEM68Q96MH6 324 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 OTORQ9NRC9 128 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 MINOS1-NBL1R4GNA1 71 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 IGHV2-70DA0A0C4DH43 119 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 NPIPB5A8MRT5 1133 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 H3BRN7 92 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 SRIP30626 198 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 IQCJQ1A5X6 159 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 COX19Q49B96 90 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 FAM120AOSQ5T036 256 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 GOLT1AQ6ZVE7 132 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 TSKUQ8WUA8 353 aa11.69□□□□□ -0.54
CLCNKA-201ENST00000331433 VWC2LB2RUY7 222 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 ESDP10768 282 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 TPPP2P59282 170 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 PRR31Q5SQ13 230 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 GDF5OSQ5U4N7 250 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 Q6ZWC4 215 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 CELSR1Q9NYQ6 3014 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 OOSP1A8MZH6 123 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 F8W735 103 aaPredicted RBP11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 APCSP02743 223 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 FCGR2BP31994 310 aaPredicted RBP11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 TCF24Q7RTU0 167 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 BPIFA4PQ86YQ2 179 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 RCHY1Q96PM5 261 aa11.68□□□□□ -0.54
CLCNKA-201ENST00000331433 TBX15Q96SF7 602 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms