RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 DNHD1Q96M86 4753 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 IGKV1D-37A0A075B6S9 117 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 TSPAN4O14817 238 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 NUPL2O15504 423 aaKnown RBP13.93□□□□□ -0.18
HMGA1-201ENST00000311487 IGKV1-17P01599 117 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 TREML4Q6UXN2 200 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 UNQ9165/PRO28630Q6UXU0 137 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 SFT2D1Q8WV19 159 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 CACNG8Q8WXS5 425 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 NOTCH3Q9UM47 2321 aa13.93□□□□□ -0.18
HMGA1-201ENST00000311487 HBE1P02100 147 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 IGLC1P0CG04 106 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 FGF7P21781 194 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 ZNF726P1Q15940 193 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 TMEM41BQ5BJD5 291 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 RCC1LQ96I51 464 aaKnown RBP13.92□□□□□ -0.18
HMGA1-201ENST00000311487 ZNF414Q96IQ9 312 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 TRAV1-1A0A0B4J248 108 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 FAM74A7A6NL05 159 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 GGCTO75223 188 aaKnown RBP13.92□□□□□ -0.18
HMGA1-201ENST00000311487 ELLP55199 621 aaPredicted RBP13.92□□□□□ -0.18
HMGA1-201ENST00000311487 DLK1P80370 383 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 FAM74A3Q4VXF1 159 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 RARRES2Q99969 163 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 C20orf24Q9BUV8 137 aa13.92□□□□□ -0.18
HMGA1-201ENST00000311487 RBFOX3A6NFN3 312 aa13.91□□□□□ -0.18
HMGA1-201ENST00000311487 SNAPINO95295 136 aa13.91□□□□□ -0.18
HMGA1-201ENST00000311487 S100A6P06703 90 aa13.91□□□□□ -0.18
HMGA1-201ENST00000311487 SSX7Q7RTT5 188 aa13.91□□□□□ -0.18
HMGA1-201ENST00000311487 OR4F17Q8NGA8 305 aa13.91□□□□□ -0.18
HMGA1-201ENST00000311487 OR4F4Q96R69 305 aa13.91□□□□□ -0.18
HMGA1-201ENST00000311487 MBD3L1Q8WWY6 194 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 TXN2Q99757 166 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 NPVFQ9HCQ7 196 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 PUS1Q9Y606 427 aaKnown RBP eCLIP13.9□□□□□ -0.18
HMGA1-201ENST00000311487 IGHV3-49A0A0A0MS15 119 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 RAB2AP61019 212 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 FHL3Q13643 280 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 KRTAP21-3Q3LHN1 58 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 NPCDR1Q9BY65 106 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 SMDT1Q9H4I9 107 aa13.9□□□□□ -0.18
HMGA1-201ENST00000311487 IGHV3OR16-13A0A075B7E8 117 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 IGHV3-74A0A0B4J1X5 117 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 M0QZ24 198 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 TM4SF20Q53R12 229 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 TMEM144Q7Z5S9 345 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 MGST2Q99735 147 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 SLC35B3Q9H1N7 401 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 WDR83OSQ9Y284 106 aa13.89□□□□□ -0.19
HMGA1-201ENST00000311487 PSG1P11464 419 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 FCGR2BP31994 310 aaPredicted RBP13.88□□□□□ -0.19
HMGA1-201ENST00000311487 HAGHQ16775 308 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 TEPPQ6URK8 271 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 LCN15Q6UWW0 184 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 GGACTQ9BVM4 153 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 RD3LP0DJH9 198 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 MYCNOSP40205 109 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 KLF5Q13887 457 aaPredicted RBP13.88□□□□□ -0.19
HMGA1-201ENST00000311487 ICAM4Q14773 271 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 ZNF506Q5JVG8 444 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 FAM209BQ5JX69 171 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 TOMM20LQ6UXN7 152 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 RPP25LQ8N5L8 163 aaKnown RBP13.88□□□□□ -0.19
HMGA1-201ENST00000311487 CLRN3Q8NCR9 226 aa13.88□□□□□ -0.19
HMGA1-201ENST00000311487 ZNF600Q6ZNG1 722 aa13.87□□□□□ -0.19
HMGA1-201ENST00000311487 LINC00482Q8N8I6 264 aa13.87□□□□□ -0.19
HMGA1-201ENST00000311487 GAR1Q9NY12 217 aaKnown RBP13.87□□□□□ -0.19
HMGA1-201ENST00000311487 DOK5Q9P104 306 aa13.87□□□□□ -0.19
HMGA1-201ENST00000311487 IGHV3-66A0A0C4DH42 116 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 ZNF98A6NK75 572 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 FGF8P55075 233 aaPredicted RBP13.86□□□□□ -0.19
HMGA1-201ENST00000311487 FFAR4Q5NUL3 377 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 ZNF709Q8N972 641 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 THAP8Q8NA92 274 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 LSM4Q9Y4Z0 139 aaKnown RBP13.86□□□□□ -0.19
HMGA1-201ENST00000311487 TRAV30A0A087WSZ9 112 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 LOC102723971A0A1B0GUV8 181 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 MAP1LC3B2A6NCE7 125 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 C17orf112F2Z3M2 114 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 IL4P05112 153 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 TMEM88Q6PEY1 159 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 MAP1LC3BQ9GZQ8 125 aa13.86□□□□□ -0.19
HMGA1-201ENST00000311487 CMYA5Q8N3K9 4069 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 EIF3GO75821 320 aaKnown RBP eCLIP13.85□□□□□ -0.197e-7■■□□□ 12.9
HMGA1-201ENST00000311487 MBP02144 154 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 SRP19P09132 144 aaKnown RBP13.85□□□□□ -0.19
HMGA1-201ENST00000311487 LYZP61626 148 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 FLI1Q01543 452 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-201ENST00000311487 RELQ04864 619 aaPredicted RBP13.85□□□□□ -0.19
HMGA1-201ENST00000311487 FAM106AQ4KMX7 169 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 MIC13Q5XKP0 118 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 CYP2G1PQ6ZSU1 146 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 CBLN2Q8IUK8 224 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 OR51G1Q8NGK1 321 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 TRGV9Q99603 122 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 GNG13Q9P2W3 67 aa13.85□□□□□ -0.19
HMGA1-201ENST00000311487 OVOL1O14753 267 aa13.84□□□□□ -0.19
HMGA1-201ENST00000311487 APOHP02749 345 aaPredicted RBP13.84□□□□□ -0.19
HMGA1-201ENST00000311487 ORM2P19652 201 aa13.84□□□□□ -0.19
HMGA1-201ENST00000311487 USF2Q15853 346 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms