RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 RPL23P62829 140 aaKnown RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 FXYD3Q14802 87 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 WDR82Q6UXN9 313 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 SLC25A45Q8N413 288 aa3.33□□□□□ -1.88
USH2A-201ENST00000307340 ZNF784Q8NCA9 323 aaPredicted RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 AURKAIP1Q9NWT8 199 aaPredicted RBP3.33□□□□□ -1.88
USH2A-201ENST00000307340 SAA2-SAA4A0A096LPE2 208 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 TRAV14DV4A0A0A6YYC5 116 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 LEPROTO15243 131 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 TEX36Q5VZQ5 186 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 ZNF880Q6PDB4 577 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 SIGLEC15Q6ZMC9 328 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 TEX43Q6ZNM6 134 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 SPCS1Q9Y6A9 102 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 GAGE12BA1L429 117 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 H7C423 109 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 WBP1Q96G27 269 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 HIST1H2BLQ99880 126 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 PIN1P1O15428 100 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 HOXA3O43365 443 aaPredicted RBP3.32□□□□□ -1.88
USH2A-201ENST00000307340 TREML4Q6UXN2 200 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 C1QL1O75973 258 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 BTCP35070 178 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 QRFPP83859 136 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 UBE2V1Q13404 147 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 ST6GALNAC3Q8NDV1 305 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 RMI2Q96E14 147 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 PRSS46E5RG02 174 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 PRSS41Q7RTY9 318 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 PATE1Q8WXA2 126 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 PFN1P07737 140 aaKnown RBP3.32□□□□□ -1.88
USH2A-201ENST00000307340 RHOHQ15669 191 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 TMEM126AQ9H061 195 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 B4DSR2 109 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 M0R381 172 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 LGALS9BQ3B8N2 356 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 LGALS9CQ6DKI2 356 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 KLF12Q9Y4X4 402 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 NAV3Q8IVL0 2385 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 PTPRBP23467 1997 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 A0A1B0GV90 55 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 MYMXA0A1B0GTQ4 84 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 C15orf62A8K5M9 175 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 PAX8Q06710 450 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 OCIAD2Q56VL3 154 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 SPATA12Q7Z6I5 190 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 WFDC6Q9BQY6 131 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 LOC107984156A0A0G2JMH3 177 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 FAM181BA6NEQ2 426 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 H0YGX0 51 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 TBX6O95947 436 aaPredicted RBP3.32□□□□□ -1.88
USH2A-201ENST00000307340 INSL3P51460 131 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 TRPT1Q86TN4 253 aaKnown RBP3.32□□□□□ -1.88
USH2A-201ENST00000307340 ARL17AQ8IVW1 177 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 CCL19Q99731 98 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 DEFB119Q8N690 84 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 ARHGAP32A7KAX9 2087 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 A4D1N5 150 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 A0A1W2PR80 420 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 SUMO2P61956 95 aaKnown RBP3.32□□□□□ -1.88
USH2A-201ENST00000307340 INSL4Q14641 139 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 ICAM4Q14773 271 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 AGRNO00468 2067 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 SPATA46Q5T0L3 261 aa3.32□□□□□ -1.88
USH2A-201ENST00000307340 ZNF71Q9NQZ8 489 aaPredicted RBP3.32□□□□□ -1.88
USH2A-201ENST00000307340 IGHV3-9P01782 118 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 HOXD3P31249 432 aaPredicted RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 LY6G5BQ8NDX9 201 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 BPESC1Q9GZL8 116 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 LINC00574Q9H8X3 128 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 FOXJ2Q9P0K8 574 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 FAM90A27PA6NNH2 459 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 PAX9P55771 341 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 ATP6V0E2Q8NHE4 81 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 FOXI3A8MTJ6 420 aaPredicted RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 C12orf77C9JDV5 145 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 K7EM74 188 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 NKX2-8O15522 239 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 CRXO43186 299 aaPredicted RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 NCR2O95944 276 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 COLCA2A8K830 154 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 PLAUP00749 431 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 RPL36AP83881 106 aaKnown RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 RPL36ALQ969Q0 106 aaKnown RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 GGTLC1Q9BX51 225 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 ESDP10768 282 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 COX6B1P14854 86 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 UBE2E1P51965 193 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 GAGE2BQ13066 116 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 GAGE2EQ4V326 116 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 GAGE2DQ9UEU5 116 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 IGHV3-20A0A0C4DH32 117 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 PAQR4Q8N4S7 273 aaPredicted RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 ZNF418Q8TF45 676 aaPredicted RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 RNF185Q96GF1 192 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 PNRC2Q9NPJ4 139 aaKnown RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 ZNF137PP52743 207 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 SPATA25Q9BR10 227 aa3.31□□□□□ -1.88
USH2A-201ENST00000307340 KLF2Q9Y5W3 355 aaPredicted RBP3.31□□□□□ -1.88
USH2A-201ENST00000307340 NABP1Q96AH0 204 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms