RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 NUP35Q8NFH5 326 aa9.45□□□□□ -0.9
CLSTN3-201ENST00000266546 PRELID3AQ96N28 172 aa9.45□□□□□ -0.9
CLSTN3-201ENST00000266546 HIST1H4GQ99525 98 aa9.45□□□□□ -0.9
CLSTN3-201ENST00000266546 ANKHD1Q8IWZ3 2542 aaKnown RBP9.45□□□□□ -0.9
CLSTN3-201ENST00000266546 M0QZ24 198 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 NUPR1O60356 82 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 SMIM17P0DL12 118 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 C5orf30Q96GV9 206 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 SPOCK3Q9BQ16 436 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 MS4A6AQ9H2W1 248 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 A0A1B0GV72 72 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 FCGR2BP31994 310 aaPredicted RBP9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 C18orf32Q8TCD1 76 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 MUC21A0A0G2JKD1 596 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 MUC21A0A140T8X8 626 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 SYS1-DBNDD2H3BUS1 97 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 TDRG1Q3Y452 100 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 MUC21Q5SSG8 566 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 COQ2Q96H96 371 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 Q9H3A6 140 aa9.44□□□□□ -0.9
CLSTN3-201ENST00000266546 A0A087X0K7 114 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 GAGE12BA1L429 117 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 BSPH1Q075Z2 132 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 POLQO75417 2590 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 ZNF503-AS2A6NEH8 195 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 RPL7P18124 248 aaKnown RBP9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 SAMD13Q5VXD3 122 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 TMEM186Q96B77 213 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 LOC107984156A0A0G2JMH3 177 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 CEACAM3P40198 252 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 GUSBP1Q15486 140 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 CENPVQ7Z7K6 275 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 ARL17AQ8IVW1 177 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 FAM216BQ8N7L0 139 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 METRNQ9UJH8 293 aa9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 FOXA2Q9Y261 457 aaPredicted RBP9.43□□□□□ -0.9
CLSTN3-201ENST00000266546 LGALS7P47929 136 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 V9GYV3 84 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 F2Z2F3 143 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 Q8NFD4 153 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 LINC00479Q96M42 142 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 YPEL4Q96NS1 127 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 MRPL20Q9BYC9 149 aaKnown RBP9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 CST9LQ9H4G1 147 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 ZNF257Q9Y2Q1 563 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 TCRBV4S1A1TA0A5B7 111 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 K7EM74 188 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 MMP23AO75900 390 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 SPANXN1Q5VSR9 72 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 OR10W1Q8NGF6 305 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 NAA38Q9BRA0 125 aaKnown RBP9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 C17orf100A8MU93 164 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 H3BVH4 76 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 PSMB2P49721 201 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 C2orf83Q53S99 150 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 OCIAD2Q56VL3 154 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 ORMDL3Q8N138 153 aa9.42□□□□□ -0.9
CLSTN3-201ENST00000266546 TRAV8-6A0A0B4J262 113 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 A0A1B0GW15 77 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 GNLYP22749 145 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 RPS20P60866 119 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 Q6AWC8 147 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 WFDC3Q8IUB2 231 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 TMEM238LA0A1B0GVL6 79 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 A6NJY4 79 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 F2RL2O00254 374 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 ANKRD11Q6UB99 2663 aaPredicted RBP9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 CD5LO43866 347 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 IGLL1P15814 213 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 HERVK_113P61574 105 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 CACNG7P62955 275 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 FAM53AQ6NSI3 398 aaPredicted RBP9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 ZCCHC24Q8N2G6 241 aaKnown RBP9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 OR4X2Q8NGF9 303 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 C11orf1Q9H5F2 150 aa9.41□□□□□ -0.9
CLSTN3-201ENST00000266546 SRRM5B3KS81 715 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 MYOD1P15172 320 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 NPPCP23582 126 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 OR5A1Q8NGJ0 315 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 RCHY1Q96PM5 261 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 IL4P05112 153 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 OR4A5Q8NH83 315 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 CCL19Q99731 98 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 MCRIP2Q9BUT9 160 aaKnown RBP9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 TMUB1Q9BVT8 246 aa9.4□□□□□ -0.9
CLSTN3-201ENST00000266546 F5H697 171 aa9.4□□□□□ -0.91
CLSTN3-201ENST00000266546 RPRMLQ8N4K4 120 aa9.4□□□□□ -0.91
CLSTN3-201ENST00000266546 ZNF502Q8TBZ5 544 aa9.4□□□□□ -0.91
CLSTN3-201ENST00000266546 TMEM160Q9NX00 188 aa9.4□□□□□ -0.91
CLSTN3-201ENST00000266546 LMO1P25800 156 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 SLAQ13239 276 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 CIARTQ8N365 385 aaPredicted RBP9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 TTC9CQ8N5M4 171 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 ZNF138P52744 262 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 HSD52Q0P140 79 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 Q6ZVH6 145 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 PSMG4Q5JS54 123 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 CD177Q8N6Q3 437 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 C11orf52Q96A22 123 aa9.39□□□□□ -0.91
CLSTN3-201ENST00000266546 A0A0G2JLM5 398 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms