RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 LINC00574Q9H8X3 128 aa13.65□□□□□ -0.22
FOXA1-201ENST00000250448 SSBP2P81877 361 aaPredicted RBP13.64□□□□□ -0.23
FOXA1-201ENST00000250448 KLF5Q13887 457 aaPredicted RBP13.64□□□□□ -0.23
FOXA1-201ENST00000250448 VPS25Q9BRG1 176 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 CSTL1Q9H114 145 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 PPIAL4EA0A075B759 164 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 IGHV1-69-2A0A0G2JMI3 117 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 PPIAL4DF5H284 164 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 PPIAL4FP0DN26 164 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 TEX36Q5VZQ5 186 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 NDUFA4L2Q9NRX3 87 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 DOPEY1Q5JWR5 2465 aa13.64□□□□□ -0.23
FOXA1-201ENST00000250448 FAM181BA6NEQ2 426 aa13.63□□□□□ -0.23
FOXA1-201ENST00000250448 HARBI1Q96MB7 349 aa13.63□□□□□ -0.23
FOXA1-201ENST00000250448 FAM208BQ5VWN6 2430 aa13.63□□□□□ -0.23
FOXA1-201ENST00000250448 M0R2Z0 102 aa13.63□□□□□ -0.23
FOXA1-201ENST00000250448 TSPOP30536 169 aa13.63□□□□□ -0.23
FOXA1-201ENST00000250448 ERHP84090 104 aaKnown RBP13.63□□□□□ -0.23
FOXA1-201ENST00000250448 C10orf113Q5VZT2 155 aa13.63□□□□□ -0.23
FOXA1-201ENST00000250448 OR1L4Q8NGR5 311 aa13.63□□□□□ -0.23
FOXA1-201ENST00000250448 OSR1Q8TAX0 266 aaPredicted RBP13.63□□□□□ -0.23
FOXA1-201ENST00000250448 MRPL20Q9BYC9 149 aaKnown RBP13.63□□□□□ -0.23
FOXA1-201ENST00000250448 PRR27Q6MZM9 219 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 CHRDL1Q9BU40 450 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 ZNF430Q9H8G1 570 aaPredicted RBP13.62□□□□□ -0.23
FOXA1-201ENST00000250448 LRRK2Q5S007 2527 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 OR2J3O76001 311 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 APOA2P02652 100 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 LEMD1Q68G75 181 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 RNASEKQ6P5S7 137 aaKnown RBP13.62□□□□□ -0.23
FOXA1-201ENST00000250448 ZNF833PQ6ZTB9 187 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 ALKBH7Q9BT30 221 aaPredicted RBP13.62□□□□□ -0.23
FOXA1-201ENST00000250448 TNFRSF19Q9NS68 423 aa13.62□□□□□ -0.23
FOXA1-201ENST00000250448 MRPS16Q9Y3D3 137 aaKnown RBP13.62□□□□□ -0.23
FOXA1-201ENST00000250448 RPL8P62917 257 aaKnown RBP13.61□□□□□ -0.23
FOXA1-201ENST00000250448 EBLN2Q6P2I7 272 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 PATE2Q6UY27 113 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 OR8B3Q8NGG8 313 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 ORAOV1Q8WV07 137 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 OR8B2Q96RD0 313 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 MAP1AP78559 2803 aaPredicted RBP13.61□□□□□ -0.23
FOXA1-201ENST00000250448 MED13LQ71F56 2210 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 TRAV9-2A0A087WT02 112 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 SSBP4Q9BWG4 385 aaPredicted RBP13.61□□□□□ -0.23
FOXA1-201ENST00000250448 SPG11Q96JI7 2443 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 GPR6P46095 362 aaPredicted RBP13.61□□□□□ -0.23
FOXA1-201ENST00000250448 UBE2G1P62253 170 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 Q56UQ5 140 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 FXYD5Q96DB9 178 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 C7orf69Q9H7B7 122 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 CTSZQ9UBR2 303 aa13.61□□□□□ -0.23
FOXA1-201ENST00000250448 IGHV2-26A0A0B4J1V2 119 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 HIGD1CA8MV81 97 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 HIST1H1EP10412 219 aaKnown RBP13.6□□□□□ -0.23
FOXA1-201ENST00000250448 HINT1P49773 126 aaPredicted RBP13.6□□□□□ -0.23
FOXA1-201ENST00000250448 H1FXQ92522 213 aaKnown RBP13.6□□□□□ -0.23
FOXA1-201ENST00000250448 FNDC4Q9H6D8 234 aaPredicted RBP13.6□□□□□ -0.23
FOXA1-201ENST00000250448 MALRD1Q5VYJ5 2156 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 CENPEQ02224 2701 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 TCRBV4S1A1TA0A5B7 111 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 C20orf202A1L168 122 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 NKX6-3A6NJ46 265 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 E7EUB6 86 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 INS-IGF2F8WCM5 200 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 CORTO00230 105 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 GNG5P63218 68 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 NPIPB3Q92617 1050 aa13.6□□□□□ -0.23
FOXA1-201ENST00000250448 hADV38S2A0JD32 116 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 H0YJW9 148 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 CAMPP49913 170 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 ZNF841Q6ZN19 808 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 ATP5L2Q7Z4Y8 100 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 UBTD1Q9HAC8 227 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 IGKV1D-37A0A075B6S9 117 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 A0A1B0GXF2 115 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 TMEM177Q53S58 311 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 LINC00312Q9Y6C7 94 aa13.59□□□□□ -0.23
FOXA1-201ENST00000250448 C2orf70A6NJV1 201 aa13.58□□□□□ -0.23
FOXA1-201ENST00000250448 NDUFS7O75251 213 aa13.58□□□□□ -0.23
FOXA1-201ENST00000250448 FSTL3O95633 263 aa13.58□□□□□ -0.23
FOXA1-201ENST00000250448 CCL3L1P16619 93 aa13.58□□□□□ -0.23
FOXA1-201ENST00000250448 PTTG1IPP53801 180 aa13.58□□□□□ -0.23
FOXA1-201ENST00000250448 WT1-ASQ06250 92 aa13.58□□□□□ -0.23
FOXA1-201ENST00000250448 CHD6Q8TD26 2715 aa13.58□□□□□ -0.24
FOXA1-201ENST00000250448 MYCNOSP40205 109 aa13.58□□□□□ -0.24
FOXA1-201ENST00000250448 THAP8Q8NA92 274 aa13.58□□□□□ -0.24
FOXA1-201ENST00000250448 ARHGAP32A7KAX9 2087 aa13.58□□□□□ -0.24
FOXA1-201ENST00000250448 VWC2LB2RUY7 222 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 IGHV3-48P01763 117 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 C10orf55Q5SWW7 151 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 UNQ5815/PRO19632Q6UWF5 114 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 TMEM167AQ8TBQ9 72 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 CGB1A6NKQ9 187 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 IGLL1P15814 213 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 OR5AN1Q8NGI8 311 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 FLYWCH2Q96CP2 140 aaKnown RBP13.57□□□□□ -0.24
FOXA1-201ENST00000250448 SLC25A5P05141 298 aaKnown RBP13.57□□□□□ -0.24
FOXA1-201ENST00000250448 REG1BP48304 166 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 LINC00305Q7Z4B0 112 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 SPATA12Q7Z6I5 190 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms