RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 LAGE3Q14657 143 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 GTSCR1Q86UQ5 136 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 HIST3H2BBQ8N257 126 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 SCRT1Q9BWW7 348 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 TRAV2A0A0B4J234 112 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 ERVK11-1P61568 191 aa11.13□□□□□ -0.63
SF3A1-201ENST00000215793 PKDREJQ9NTG1 2253 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 SPATA31B1PQ5VZV4 182 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 GREB1Q4ZG55 1949 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 H0YJW9 148 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 CRPP02741 224 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 LYPD1Q8N2G4 141 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 EXOC3-AS1Q8N2X6 119 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 ADARB2-AS1A8MUL3 147 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 Q0VFX4 171 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 TMEM95Q3KNT9 176 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 OR2K2Q8NGT1 345 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 DIDO1Q9BTC0 2240 aaKnown RBP11.12□□□□□ -0.63
SF3A1-201ENST00000215793 MYO7BQ6PIF6 2116 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 IGKV2-40A0A087WW87 121 aaPredicted RBP11.12□□□□□ -0.63
SF3A1-201ENST00000215793 TRBV7-1A0A0A6YYK4 115 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 IGKV2D-40P01614 121 aaPredicted RBP11.12□□□□□ -0.63
SF3A1-201ENST00000215793 CXCL1P09341 107 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 LINC00469Q8N7U9 141 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 LOC285556D6RIA3 1793 aa11.12□□□□□ -0.63
SF3A1-201ENST00000215793 TMEM8BA6NDV4 472 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 RPL15P61313 204 aaKnown RBP11.11□□□□□ -0.63
SF3A1-201ENST00000215793 Q6P435 159 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 TNFSF13O75888 250 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 GZMBP10144 247 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 QRFPP83859 136 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 SIPA1L1O43166 1804 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 AMBPP02760 352 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 LINC00477Q96M19 166 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 WDR90Q96KV7 1748 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 LCTP09848 1927 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 IGHG3P01860 377 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 CD300EQ496F6 205 aaPredicted RBP11.11□□□□□ -0.63
SF3A1-201ENST00000215793 ZNF479Q96JC4 524 aa11.11□□□□□ -0.63
SF3A1-201ENST00000215793 BRWD3Q6RI45 1802 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 SFTA2Q6UW10 78 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 FOXL2NBQ6ZUU3 175 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 TRAV3A0A0B4J244 114 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 TMEM238C9JI98 176 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 SRD5A1P18405 259 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 USMG5Q96IX5 58 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 KLHDC3Q9BQ90 382 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 MEGF9Q9H1U4 602 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 FNDC4Q9H6D8 234 aaPredicted RBP11.1□□□□□ -0.63
SF3A1-201ENST00000215793 SIGLEC9Q9Y336 463 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 FNDC10F2Z333 226 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 GAFA1Q96PS6 74 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 PRADC1Q9BSG0 188 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 PDCD11Q14690 1871 aaKnown RBP11.1□□□□□ -0.63
SF3A1-201ENST00000215793 LINC00473A8K010 186 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 D6R8Y8 96 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 BUB1B-PAK6H3BSN5 160 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 TMEM219Q86XT9 240 aa11.1□□□□□ -0.63
SF3A1-201ENST00000215793 A0A087WX48 190 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 B3GALT5-AS1P59052 145 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 SRSF4Q08170 494 aaKnown RBP11.09□□□□□ -0.63
SF3A1-201ENST00000215793 LYZL1Q6UWQ5 148 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 Q6ZS92 163 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 BMPERQ8N8U9 685 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 TRAV12-3A0A0B4J271 114 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 SRRM4A7MD48 611 aaKnown RBP11.09□□□□□ -0.63
SF3A1-201ENST00000215793 H3BUX3 64 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 RPL36AP83881 106 aaKnown RBP11.09□□□□□ -0.63
SF3A1-201ENST00000215793 RPL36ALQ969Q0 106 aaKnown RBP11.09□□□□□ -0.63
SF3A1-201ENST00000215793 C5orf63A6NC05 138 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 A8MWV9 139 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 IGHV4-39P01824 125 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 HGFACQ04756 655 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 RCHY1Q96PM5 261 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 RFNGQ9Y644 331 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 PI4KAP42356 2102 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 GGTLC3B5MD39 225 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 NTF4P34130 210 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 KLRD1Q13241 179 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 ZNF876PQ49A33 203 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 C11orf44Q8N8P7 122 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 DPH3P1Q9H4G8 78 aa11.09□□□□□ -0.63
SF3A1-201ENST00000215793 DOCK10Q96BY6 2186 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 A0A0G2JNJ9 132 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 ASCL4Q6XD76 172 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 DTX1Q86Y01 620 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 SRSF8Q9BRL6 282 aaKnown RBP11.08□□□□□ -0.64
SF3A1-201ENST00000215793 Q9UFV3 132 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 ERG28Q9UKR5 140 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 IGKV1D-17A0A075B6S4 117 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 RPRMLQ8N4K4 120 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.08□□□□□ -0.64
SF3A1-201ENST00000215793 ZNF688P0C7X2 276 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 C3orf36Q3SXR2 165 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 GLRX5Q86SX6 157 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 PLEKHB2Q96CS7 222 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 VCYO14598 125 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 ITGB1BP1O14713 200 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 NCR2O95944 276 aa11.08□□□□□ -0.64
SF3A1-201ENST00000215793 ATRXP46100 2492 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms