RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 HNRNPCP07910 306 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLN3-259ENST00000637551 PAFAH1B2P68402 229 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 ACOT7LQ6ZUV0 252 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 RNF125Q96EQ8 232 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 RNF2Q99496 336 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 C11orf1Q9H5F2 150 aa13.7□□□□□ -0.22
CLN3-259ENST00000637551 HELTA6NFD8 242 aa13.69□□□□□ -0.22
CLN3-259ENST00000637551 L7N2F9 121 aa13.69□□□□□ -0.22
CLN3-259ENST00000637551 IL4P05112 153 aa13.69□□□□□ -0.22
CLN3-259ENST00000637551 PSG1P11464 419 aa13.69□□□□□ -0.22
CLN3-259ENST00000637551 AP2S1P53680 142 aaPredicted RBP13.69□□□□□ -0.22
CLN3-259ENST00000637551 SELENOTP62341 195 aa13.69□□□□□ -0.22
CLN3-259ENST00000637551 VAMP2P63027 116 aa13.69□□□□□ -0.22
CLN3-259ENST00000637551 PAIP2BQ9ULR5 123 aaKnown RBP13.69□□□□□ -0.22
CLN3-259ENST00000637551 H3BP45 60 aa13.68□□□□□ -0.22
CLN3-259ENST00000637551 DEDDO75618 318 aa13.68□□□□□ -0.22
CLN3-259ENST00000637551 FRMD6-AS1P0C7T7 363 aa13.68□□□□□ -0.22
CLN3-259ENST00000637551 C1orf194Q5T5A4 169 aa13.68□□□□□ -0.22
CLN3-259ENST00000637551 ST8SIA2Q92186 375 aa13.68□□□□□ -0.22
CLN3-259ENST00000637551 SEPSECSQ9HD40 501 aaKnown RBP13.68□□□□□ -0.22
CLN3-259ENST00000637551 LYRM2Q9NU23 88 aaPredicted RBP13.68□□□□□ -0.22
CLN3-259ENST00000637551 MGAT4CQ9UBM8 478 aa13.68□□□□□ -0.22
CLN3-259ENST00000637551 RABAC1Q9UI14 185 aa13.68□□□□□ -0.22
CLN3-259ENST00000637551 IGKV1OR2-108A0A075B7D4 117 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 IGHV3OR16-8A0A075B7F1 116 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 ZNF207O43670 478 aaKnown RBP13.67□□□□□ -0.22
CLN3-259ENST00000637551 DFFBO76075 338 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 PET100P0DJ07 73 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 AKR1C1Q04828 323 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 S100A7AQ86SG5 101 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 NPVFQ9HCQ7 196 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 RNF24Q9Y225 148 aa13.67□□□□□ -0.22
CLN3-259ENST00000637551 OR11H12B2RN74 326 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 CD7P09564 240 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 P2RY1P47900 373 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 USF2Q15853 346 aaPredicted RBP13.66□□□□□ -0.22
CLN3-259ENST00000637551 PXDC1Q5TGL8 231 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 LINC00322Q6ZN03 302 aaPredicted RBP13.66□□□□□ -0.22
CLN3-259ENST00000637551 TCF24Q7RTU0 167 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 BPIFCQ8NFQ6 507 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 ASB13Q8WXK3 278 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 TUBA4BQ9H853 241 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 FBXL17Q9UF56 701 aa13.66□□□□□ -0.22
CLN3-259ENST00000637551 BUB3O43684 328 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 RLN2P04090 185 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 METTL15P1P0C7V9 234 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 HBG1P69891 147 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 HBG2P69892 147 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 RAB32Q13637 225 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 SAMD13Q5VXD3 122 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 TEPPQ6URK8 271 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 C16orf54Q6UWD8 224 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 STX12Q86Y82 276 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 GLMPQ8WWB7 406 aa13.65□□□□□ -0.22
CLN3-259ENST00000637551 LSM5Q9Y4Y9 91 aaKnown RBP13.65□□□□□ -0.22
CLN3-259ENST00000637551 E5RGE8 158 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 GOSR2O14653 212 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 SSNA1O43805 119 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 S100A11P31949 105 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 SULT1A1P50225 295 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 CAV2P51636 162 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 PLP1P60201 277 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 ZNF90Q03938 601 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 TM2D3Q9BRN9 247 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 BIRC6Q9NR09 4857 aa13.64□□□□□ -0.23
CLN3-259ENST00000637551 S100A10P60903 97 aa13.63□□□□□ -0.23
CLN3-259ENST00000637551 BAXQ07812 192 aa13.63□□□□□ -0.23
CLN3-259ENST00000637551 ATP6V1FQ16864 119 aa13.63□□□□□ -0.23
CLN3-259ENST00000637551 VWC2Q2TAL6 325 aa13.63□□□□□ -0.23
CLN3-259ENST00000637551 CHAC2Q8WUX2 184 aa13.63□□□□□ -0.23
CLN3-259ENST00000637551 GPR82Q96P67 336 aa13.63□□□□□ -0.23
CLN3-259ENST00000637551 APOHP02749 345 aaPredicted RBP13.62□□□□□ -0.23
CLN3-259ENST00000637551 H2BFSP57053 126 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 RGS21Q2M5E4 152 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 ODF3L2Q3SX64 289 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 ZNF546Q86UE3 836 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 TMEM252Q8N6L7 170 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 SLC25A31Q9H0C2 315 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 MS4A6AQ9H2W1 248 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 ZMAT4Q9H898 229 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 SRD5A3Q9H8P0 318 aa13.62□□□□□ -0.23
CLN3-259ENST00000637551 EPPK1P58107 5090 aaKnown RBP13.62□□□□□ -0.23
CLN3-259ENST00000637551 KIR2DL5BA0A0G2JN68 375 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 KIR2DL5BA0A0G2JPC4 375 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 MPDU1O75352 247 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 BCAP31P51572 246 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 SLC38A11Q08AI6 406 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 RAB31Q13636 194 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 CYP2G1PQ6ZSU1 146 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 KIR2DL5AQ8N109 375 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 KIR2DL5BQ8NHK3 375 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 SPATA25Q9BR10 227 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 DNAH9Q9NYC9 4486 aa13.61□□□□□ -0.23
CLN3-259ENST00000637551 IGHV3-49A0A0A0MS15 119 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 SMCO3A2RU48 225 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 DNASE2O00115 360 aaPredicted RBP13.6□□□□□ -0.23
CLN3-259ENST00000637551 LYZP61626 148 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 SBSPONQ8IVN8 264 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 LILRB2Q8N423 598 aa13.6□□□□□ -0.23
CLN3-259ENST00000637551 DEFB125Q8N687 156 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms