RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TPPP2P59282 170 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 PATE2Q6UY27 113 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 OR1L4Q8NGR5 311 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 ZNF418Q8TF45 676 aaPredicted RBP14.32□□□□□ -0.12
CLN3-254ENST00000637050 USMG5Q96IX5 58 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 PFDN5Q99471 154 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 KLK15Q9H2R5 256 aa14.32□□□□□ -0.12
CLN3-254ENST00000637050 GAR1Q9NY12 217 aaKnown RBP14.32□□□□□ -0.12
CLN3-254ENST00000637050 TMEM89A2RUT3 159 aa14.31□□□□□ -0.12
CLN3-254ENST00000637050 OR2T8A6NH00 312 aa14.31□□□□□ -0.12
CLN3-254ENST00000637050 HMGB3O15347 200 aaKnown RBP14.31□□□□□ -0.12
CLN3-254ENST00000637050 PF4V1P10720 104 aa14.31□□□□□ -0.12
CLN3-254ENST00000637050 FAM78BQ5VT40 261 aa14.31□□□□□ -0.12
CLN3-254ENST00000637050 Q71RC1 249 aaPredicted RBP14.31□□□□□ -0.12
CLN3-254ENST00000637050 RNF2Q99496 336 aa14.31□□□□□ -0.12
CLN3-254ENST00000637050 SCRT1Q9BWW7 348 aa14.31□□□□□ -0.12
CLN3-254ENST00000637050 FUT9Q9Y231 359 aa14.31□□□□□ -0.12
CLN3-254ENST00000637050 ELOA3CA0A087WX78 387 aaPredicted RBP14.3□□□□□ -0.12
CLN3-254ENST00000637050 COX7A2P2O60397 106 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 SCGB2A1O75556 95 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 STAG3L2P0CL84 134 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 STAG3L3P0CL85 134 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 PSMB8P28062 276 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 ADMP35318 185 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 HILS1P60008 231 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 SPATA31B1PQ5VZV4 182 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 UQCC3Q6UW78 93 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 ZNF329Q86UD4 541 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 SERTAD4Q9NUC0 356 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 DOK5Q9P104 306 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 INAFM1C9JVW0 142 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 CLEC3BP05452 202 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 RNASE1P07998 156 aaKnown RBP14.3□□□□□ -0.12
CLN3-254ENST00000637050 RAB9AP51151 201 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 RPL15P61313 204 aaKnown RBP14.3□□□□□ -0.12
CLN3-254ENST00000637050 C10orf113Q5VZT2 155 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 OR51G1Q8NGK1 321 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 CHRDL1Q9BU40 450 aa14.3□□□□□ -0.12
CLN3-254ENST00000637050 MRPL32Q9BYC8 188 aaKnown RBP14.3□□□□□ -0.12
CLN3-254ENST00000637050 NUPL2O15504 423 aaKnown RBP14.29□□□□□ -0.12
CLN3-254ENST00000637050 ORM2P19652 201 aa14.29□□□□□ -0.12
CLN3-254ENST00000637050 GPR183P32249 361 aa14.29□□□□□ -0.12
CLN3-254ENST00000637050 SRSF3P84103 164 aaKnown RBP14.29□□□□□ -0.12
CLN3-254ENST00000637050 PMS2P11Q13670 270 aa14.29□□□□□ -0.12
CLN3-254ENST00000637050 CLEC19AQ6UXS0 136 aa14.29□□□□□ -0.12
CLN3-254ENST00000637050 MIR17HGQ75NE6 70 aa14.29□□□□□ -0.12
CLN3-254ENST00000637050 WI2-2373I1.2A0A1W2PRP0 233 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 HYPMO75409 117 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 OR2C1O95371 312 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 SLC35B1P78383 322 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 GUK1Q16774 197 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 C10orf99Q6UWK7 81 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 Q6ZSV7 163 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 ZNF491Q8N8L2 437 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 OR1B1Q8NGR6 318 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 HIVEP2P31629 2446 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 FLNBO75369 2602 aaKnown RBP14.28□□□□□ -0.12
CLN3-254ENST00000637050 BAHCC1Q9P281 2608 aa14.28□□□□□ -0.12
CLN3-254ENST00000637050 A0A0G2JLM5 398 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 TGOLN2O43493 480 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 CXorf1O96002 111 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 CD5P06127 495 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 LYZP61626 148 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 TEX38Q6PEX7 206 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 LCNL1Q6ZST4 164 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 Q8WTZ3 238 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 ZNF414Q96IQ9 312 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 PBDC1Q9BVG4 233 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 TMPRSS5Q9H3S3 457 aa14.27□□□□□ -0.12
CLN3-254ENST00000637050 TECRQ9NZ01 308 aaKnown RBP14.27□□□□□ -0.12
CLN3-254ENST00000637050 RBFOX3A6NFN3 312 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 ARL14EPLP0DKL9 152 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 FOXE3Q13461 319 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 MORN5Q5VZ52 161 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 RNF125Q96EQ8 232 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 UHRF2Q96PU4 802 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 MRPL27Q9P0M9 148 aaKnown RBP14.26□□□□□ -0.13
CLN3-254ENST00000637050 ANK3Q12955 4377 aaKnown RBP14.26□□□□□ -0.13
CLN3-254ENST00000637050 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.26□□□□□ -0.13
CLN3-254ENST00000637050 ELANEP08246 267 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 C8orf88P0DMB2 117 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 TAS2R45P59539 299 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 KIAA0141Q14154 515 aaPredicted RBP14.26□□□□□ -0.13
CLN3-254ENST00000637050 ZNF343Q6P1L6 599 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 ZNF600Q6ZNG1 722 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 LINC00305Q7Z4B0 112 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 JMJD8Q96S16 334 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 EIF5A2Q9GZV4 153 aaKnown RBP14.26□□□□□ -0.13
CLN3-254ENST00000637050 GNG13Q9P2W3 67 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 HIGD1AQ9Y241 93 aa14.26□□□□□ -0.13
CLN3-254ENST00000637050 I3L521 148 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 IL4P05112 153 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 PSMB3P49720 205 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 KHDC3LQ587J8 217 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 RNF152Q8N8N0 203 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 MYOZ3Q8TDC0 251 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 FAM167A-AS1Q96KT0 104 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 RARRES2Q99969 163 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 TMEM231Q9H6L2 316 aa14.25□□□□□ -0.13
CLN3-254ENST00000637050 PUS1Q9Y606 427 aaKnown RBP eCLIP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms