RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 PSMG3Q9BT73 122 aaPredicted RBP9.32□□□□□ -0.92
CLN6-217ENST00000636964 DERL1Q9BUN8 251 aa9.32□□□□□ -0.92
CLN6-217ENST00000636964 VAMP8Q9BV40 100 aa9.32□□□□□ -0.92
CLN6-217ENST00000636964 SLC25A22Q9H936 323 aa9.32□□□□□ -0.92
CLN6-217ENST00000636964 UBTD1Q9HAC8 227 aa9.32□□□□□ -0.92
CLN6-217ENST00000636964 UBE2L5PA0A1B0GUS4 154 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 TMEM8BA6NDV4 472 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 DLX6P56179 175 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 OR4F5Q8NH21 305 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 OR4F4Q96R69 305 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 SELENOKQ9Y6D0 94 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 USP24Q9UPU5 2620 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 J3QR06 171 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 KIR2DS2P43631 304 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 C11orf71Q6IPW1 123 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 ABHD12Q8N2K0 398 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 MRAP2Q96G30 205 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 WDR61Q9GZS3 305 aaKnown RBP9.31□□□□□ -0.92
CLN6-217ENST00000636964 TMEM250H0YL14 139 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 IGHV1-8P0DP01 117 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 HNRNPA3P51991 378 aaKnown RBP9.31□□□□□ -0.92
CLN6-217ENST00000636964 LCN2P80188 198 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 RHOGP84095 191 aa9.31□□□□□ -0.92
CLN6-217ENST00000636964 HEYLQ9NQ87 328 aaPredicted RBP9.31□□□□□ -0.92
CLN6-217ENST00000636964 FLNCQ14315 2725 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 ADTRPQ96IZ2 230 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 CRYBG3Q68DQ2 2970 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 PRB1P04280 392 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 FER1L6-AS1Q8NA97 138 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 OR10P1Q8NGE3 313 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 THYN1Q9P016 225 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 IGHV3-72A0A0B4J1Y9 119 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 PMS2P5A8MQ11 134 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 GATA3P23771 443 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 ATP5IP56385 69 aaPredicted RBP9.3□□□□□ -0.92
CLN6-217ENST00000636964 RTL8BQ17RB0 113 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 TMEM30BQ3MIR4 351 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 FFAR4Q5NUL3 377 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 Q6ZN92 141 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 ZNF833PQ6ZTB9 187 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 SSBP4Q9BWG4 385 aaPredicted RBP9.3□□□□□ -0.92
CLN6-217ENST00000636964 TCF19Q9Y242 345 aa9.3□□□□□ -0.92
CLN6-217ENST00000636964 TRBV20OR9-2A0A075B6H5 130 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 HYPMO75409 117 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 CBLN1P23435 193 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 SERF2P84101 59 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 SLC39A9Q9NUM3 307 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.29□□□□□ -0.927e-7■■□□□ 11.4
CLN6-217ENST00000636964 C15orf62A8K5M9 175 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 RRHO14718 337 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 PAGE4O60829 102 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 COX7A1P24310 79 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 YPEL3P61236 119 aaPredicted RBP9.29□□□□□ -0.92
CLN6-217ENST00000636964 GNB1P62873 340 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 TCTEX1D4Q5JR98 221 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 GTF2H5Q6ZYL4 71 aa9.29□□□□□ -0.92
CLN6-217ENST00000636964 TAF15Q92804 592 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLN6-217ENST00000636964 IFNA1P01562 189 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 ZNF709Q8N972 641 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 C5orf17Q8NAS9 161 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 OR8B3Q8NGG8 313 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 OR9G1Q8NH87 305 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 OR8B2Q96RD0 313 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 TMEM133Q9H2Q1 129 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 PATZ1Q9HBE1 687 aaKnown RBP9.28□□□□□ -0.92
CLN6-217ENST00000636964 C15orf61A6NNL5 157 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 H0YJW9 148 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 TIMD4Q96H15 378 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 LRRK2Q5S007 2527 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 SAA1P0DJI8 122 aaPredicted RBP9.28□□□□□ -0.92
CLN6-217ENST00000636964 IGLC2P0DOY2 106 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 IGLC3P0DOY3 106 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 AMMECR1LQ6DCA0 310 aa9.28□□□□□ -0.92
CLN6-217ENST00000636964 NEIL1Q96FI4 390 aaPredicted RBP9.28□□□□□ -0.92
CLN6-217ENST00000636964 USP9YO00507 2555 aaPredicted RBP9.27□□□□□ -0.92
CLN6-217ENST00000636964 PLXNB1O43157 2135 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 ENSAO43768 121 aaKnown RBP9.27□□□□□ -0.93
CLN6-217ENST00000636964 APOA2P02652 100 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 VDAC2P45880 294 aaPredicted RBP9.27□□□□□ -0.93
CLN6-217ENST00000636964 PSMB3P49720 205 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 TPPP2P59282 170 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 PDLIM3Q53GG5 364 aaPredicted RBP9.27□□□□□ -0.93
CLN6-217ENST00000636964 KCNIP4Q6PIL6 250 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 SGMS2Q8NHU3 365 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 RITA1Q96K30 269 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 OR51B2Q9Y5P1 312 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 IGHV2-26A0A0B4J1V2 119 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 FAM90A9PA6NNJ1 464 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 FOXL1Q12952 345 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 SPATA45Q537H7 98 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 DTX2Q86UW9 622 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 NEU4Q8WWR8 484 aaPredicted RBP9.27□□□□□ -0.93
CLN6-217ENST00000636964 ST6GALNAC6Q969X2 333 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 NABP2Q9BQ15 211 aa9.27□□□□□ -0.93
CLN6-217ENST00000636964 UTP20O75691 2785 aaKnown RBP9.27□□□□□ -0.93
CLN6-217ENST00000636964 VENTXO95231 258 aa9.26□□□□□ -0.93
CLN6-217ENST00000636964 ATP5G3P48201 142 aa9.26□□□□□ -0.93
CLN6-217ENST00000636964 MFAP4P55083 255 aa9.26□□□□□ -0.93
CLN6-217ENST00000636964 HSPE1P61604 102 aaKnown RBP9.26□□□□□ -0.93
CLN6-217ENST00000636964 OR5AN1Q8NGI8 311 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms