RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 BRI3O95415 125 aa12.88□□□□□ -0.35
LDB3-208ENST00000623007 GNG4P50150 75 aa12.88□□□□□ -0.35
LDB3-208ENST00000623007 LYZP61626 148 aa12.88□□□□□ -0.35
LDB3-208ENST00000623007 SUMO1P63165 101 aaKnown RBP12.88□□□□□ -0.35
LDB3-208ENST00000623007 RPL19P84098 196 aaKnown RBP12.88□□□□□ -0.35
LDB3-208ENST00000623007 TIGITQ495A1 244 aa12.88□□□□□ -0.35
LDB3-208ENST00000623007 FAM120AOSQ5T036 256 aa12.88□□□□□ -0.35
LDB3-208ENST00000623007 UNQ5815/PRO19632Q6UWF5 114 aa12.88□□□□□ -0.35
LDB3-208ENST00000623007 FXYD5Q96DB9 178 aa12.88□□□□□ -0.35
LDB3-208ENST00000623007 TRAV9-1A0A075B6T8 112 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 OR10J4P0C629 311 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 RPL35P42766 123 aaKnown RBP12.87□□□□□ -0.35
LDB3-208ENST00000623007 RAB9AP51151 201 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 CNN1P51911 297 aaKnown RBP12.87□□□□□ -0.35
LDB3-208ENST00000623007 NDPQ00604 133 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 KIAA0141Q14154 515 aaPredicted RBP12.87□□□□□ -0.35
LDB3-208ENST00000623007 Q56UQ5 140 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 PRSS57Q6UWY2 283 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 BPIFA4PQ86YQ2 179 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 NECAP1Q8NC96 275 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 RNF125Q96EQ8 232 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 SLC25A39Q9BZJ4 359 aaPredicted RBP12.87□□□□□ -0.35
LDB3-208ENST00000623007 CDC42EP3Q9UKI2 254 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 NAV3Q8IVL0 2385 aa12.87□□□□□ -0.35
LDB3-208ENST00000623007 WI2-2373I1.2A0A1W2PRP0 233 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 H3BUA1 57 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 NBEAP1P0C6P0 100 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 EGR2P11161 476 aaPredicted RBP12.86□□□□□ -0.35
LDB3-208ENST00000623007 GALR1P47211 349 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 LYPD1Q8N2G4 141 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 C2CD4CQ8TF44 421 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 SFRP2Q96HF1 295 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 FAM210BQ96KR6 192 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 SHANK2-AS3Q9BTD1 123 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 FBXL7Q9UJT9 491 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 RELNP78509 3460 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 IGHV3-21A0A0B4J1V1 117 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 GGTLC3B5MD39 225 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 NDUFB8O95169 186 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 S100A6P06703 90 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 HIST1H1EP10412 219 aaKnown RBP12.86□□□□□ -0.35
LDB3-208ENST00000623007 DEFB113Q30KQ7 82 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 ZNF343Q6P1L6 599 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 TEX29Q8N6K0 151 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 OR4F17Q8NGA8 305 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 MBD6Q96DN6 1003 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 PYGO2Q9BRQ0 406 aa12.86□□□□□ -0.35
LDB3-208ENST00000623007 PLXNB1O43157 2135 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 TRBV7-1A0A0A6YYK4 115 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 TRBV9A0A0B4J1U6 114 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 TRAV5A0A0B4J249 113 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 A1L4Q6 167 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 ATP6V0E1O15342 81 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 GP9P14770 177 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 CRYBB3P26998 211 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 RPS10P46783 165 aaKnown RBP12.85□□□□□ -0.35
LDB3-208ENST00000623007 FOXL1Q12952 345 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 MORN5Q5VZ52 161 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 C19orf35Q6ZS72 473 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 ZNF491Q8N8L2 437 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 C5orf17Q8NAS9 161 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 ZNF580Q9UK33 172 aa12.85□□□□□ -0.35
LDB3-208ENST00000623007 A0A0U1RQK1 487 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 FAM223BA6NKX1 122 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 H3BRN7 92 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 PFN1P07737 140 aaKnown RBP12.84□□□□□ -0.35
LDB3-208ENST00000623007 RUSC1-AS1Q66K80 236 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 FAM223AQ8IWN6 122 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 OR5T1Q8NG75 326 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 EEF1AKMT3Q96AZ1 226 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 HSPB9Q9BQS6 159 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 CHRDL1Q9BU40 450 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 DERL1Q9BUN8 251 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 URGCP-MRPS24S4R325 110 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 CFAP46Q8IYW2 2715 aa12.84□□□□□ -0.35
LDB3-208ENST00000623007 BMPR1BO00238 502 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 OR2J3O76001 311 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 IGF1P05019 195 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 IL4P05112 153 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 PYYP10082 97 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 MYCNOSP40205 109 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 PDE6HQ13956 83 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 FBLN7Q53RD9 439 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 ZNF600Q6ZNG1 722 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 ZNF329Q86UD4 541 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 ARL6IP6Q8N6S5 226 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 OR10G8Q8NGN5 311 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 OTORQ9NRC9 128 aa12.83□□□□□ -0.35
LDB3-208ENST00000623007 LRBAP50851 2863 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 A0A096LNT2 108 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 PPP5D1E7EU14 171 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 PEX7O00628 323 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 GGCTO75223 188 aaKnown RBP12.83□□□□□ -0.36
LDB3-208ENST00000623007 FAM3BP58499 235 aaPredicted RBP12.83□□□□□ -0.36
LDB3-208ENST00000623007 ECSCRQ19T08 205 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 TEX38Q6PEX7 206 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 BRD3OSQ6XYD6 125 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 OCC1Q8TAD7 63 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 PIFOQ8TCI5 191 aa12.83□□□□□ -0.36
LDB3-208ENST00000623007 ELOVL1Q9BW60 279 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms