RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RAB5CP51148 216 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 RAB2AP61019 212 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 ACOT6Q3I5F7 207 aaPredicted RBP11.32□□□□□ -0.6
VRK3-212ENST00000596814 TMEM41BQ5BJD5 291 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 RNF141Q8WVD5 230 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 VSIRQ9H7M9 311 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 SETD2Q9BYW2 2564 aaPredicted RBP11.32□□□□□ -0.6
VRK3-212ENST00000596814 M6PRP20645 277 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 ZNF600Q6ZNG1 722 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 OR51G1Q8NGK1 321 aa11.32□□□□□ -0.6
VRK3-212ENST00000596814 PEF1Q9UBV8 284 aaKnown RBP11.32□□□□□ -0.6
VRK3-212ENST00000596814 CD28P10747 220 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 LYZP61626 148 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 RELQ04864 619 aaPredicted RBP11.31□□□□□ -0.6
VRK3-212ENST00000596814 GCSAMLQ5JQS6 135 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 OR10G4Q8NGN3 311 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 OR10G9Q8NGN4 311 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 OR10G7Q8NGN6 311 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 FAM213BQ8TBF2 198 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 Q8WTZ3 238 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 RPRMQ9NS64 109 aa11.31□□□□□ -0.6
VRK3-212ENST00000596814 ZNF705EA8MWA4 302 aaPredicted RBP11.3□□□□□ -0.6
VRK3-212ENST00000596814 BMPR1BO00238 502 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 CDX1P47902 265 aaPredicted RBP11.3□□□□□ -0.6
VRK3-212ENST00000596814 FOXL1Q12952 345 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 PXDC1Q5TGL8 231 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 DPPA3Q6W0C5 159 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 C11orf44Q8N8P7 122 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 OR1L4Q8NGR5 311 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 LRRC20Q8TCA0 184 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 PFDN5Q99471 154 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 DOK5Q9P104 306 aa11.3□□□□□ -0.6
VRK3-212ENST00000596814 PUS1Q9Y606 427 aaKnown RBP eCLIP11.3□□□□□ -0.6
VRK3-212ENST00000596814 IGHV3-35A0A0C4DH35 117 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 COX7A2P2O60397 106 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 GGCTO75223 188 aaKnown RBP11.29□□□□□ -0.6
VRK3-212ENST00000596814 OR2C1O95371 312 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 IL4P05112 153 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 ORM2P19652 201 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 FHITP49789 147 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 PLP1P60201 277 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 FAM122CQ6P4D5 195 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 OR1B1Q8NGR6 318 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 C4orf3Q8WVX3 66 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 WFDC12Q8WWY7 111 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 RNF125Q96EQ8 232 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 PBDC1Q9BVG4 233 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 I3L521 148 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 RAB14P61106 215 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 C18orf65Q6ZTR6 163 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 RPP25LQ8N5L8 163 aaKnown RBP11.29□□□□□ -0.6
VRK3-212ENST00000596814 KLHL30-AS1Q8NEE0 82 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 ZNF414Q96IQ9 312 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 CITED2Q99967 270 aaPredicted RBP11.29□□□□□ -0.6
VRK3-212ENST00000596814 SLC25A22Q9H936 323 aa11.29□□□□□ -0.6
VRK3-212ENST00000596814 TSSC4Q9Y5U2 329 aaPredicted RBP11.29□□□□□ -0.6
VRK3-212ENST00000596814 ELOA3CA0A087WX78 387 aaPredicted RBP11.28□□□□□ -0.6
VRK3-212ENST00000596814 WI2-2373I1.2A0A1W2PRP0 233 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 NUDT19A8MXV4 375 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 HYPMO75409 117 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 OR5G3P0C626 314 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 CDC34P49427 236 aaPredicted RBP11.28□□□□□ -0.6
VRK3-212ENST00000596814 HIST2H2BDQ6DRA6 164 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 TOMM20LQ6UXN7 152 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 GATAD1Q8WUU5 269 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 PCNPQ8WW12 178 aaKnown RBP11.28□□□□□ -0.6
VRK3-212ENST00000596814 TMEM37Q8WXS4 190 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 SAT2Q96F10 170 aaPredicted RBP11.28□□□□□ -0.6
VRK3-212ENST00000596814 RCC1LQ96I51 464 aaKnown RBP11.28□□□□□ -0.6
VRK3-212ENST00000596814 C19orf24Q9BVV8 132 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 ACTR3CQ9C0K3 210 aaPredicted RBP11.28□□□□□ -0.6
VRK3-212ENST00000596814 ZFAND3Q9H8U3 227 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 DNAJC4Q9NNZ3 241 aa11.28□□□□□ -0.6
VRK3-212ENST00000596814 A0A1W2PPV4 95 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 SEC14L6B5MCN3 397 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 NMBP08949 121 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 RHOBP62745 196 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 BLOC1S1P78537 153 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 USF2Q15853 346 aaPredicted RBP11.27□□□□□ -0.61
VRK3-212ENST00000596814 FAM78BQ5VT40 261 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 C10orf113Q5VZT2 155 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 PRIMA1Q86XR5 153 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 RNF2Q99496 336 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 HIGD1AQ9Y241 93 aa11.27□□□□□ -0.61
VRK3-212ENST00000596814 IGHV4OR15-8A0A075B7B6 117 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 A0A087WW49 117 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 CTXND1A0A1B0GTU2 59 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 NDUFA4O00483 81 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 HSPB1P04792 205 aaKnown RBP11.26□□□□□ -0.61
VRK3-212ENST00000596814 ZNF726P1Q15940 193 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 RPEL1Q2QD12 228 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 KRTAP24-1Q3LI83 254 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 CLLU1Q5K131 121 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 PATE2Q6UY27 113 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 MRPL32Q9BYC8 188 aaKnown RBP11.26□□□□□ -0.61
VRK3-212ENST00000596814 SEPSECSQ9HD40 501 aaKnown RBP11.26□□□□□ -0.61
VRK3-212ENST00000596814 IGHV3OR16-8A0A075B7F1 116 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 A0A1W2PRX2 142 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 DEFB136Q30KP8 78 aa11.26□□□□□ -0.61
VRK3-212ENST00000596814 SSX7Q7RTT5 188 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms