RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 GAMTQ14353 236 aa9.28□□□□□ -0.92
UPF1-203ENST00000594504 RBPMS2Q6ZRY4 209 aaKnown RBP9.28□□□□□ -0.92
UPF1-203ENST00000594504 ZFAND3Q9H8U3 227 aa9.28□□□□□ -0.92
UPF1-203ENST00000594504 SMPXQ9UHP9 88 aa9.28□□□□□ -0.92
UPF1-203ENST00000594504 TRAV25A0A0B4J276 109 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 IGHV7-4-1A0A0J9YVY3 117 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 A0A0J9YWU9 116 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 BMI1P35226 326 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 PAX9P55771 341 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 IL15RAQ13261 267 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 PMS2P11Q13670 270 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 Q8WTZ3 238 aa9.27□□□□□ -0.93
UPF1-203ENST00000594504 C7orf66A4D0T2 115 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 ZFP92A6NM28 416 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 K7EPK0 472 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 L7N2F9 121 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 GOSR2O14653 212 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 TOMM40O96008 361 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 FABP1P07148 127 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 VAMP2P63027 116 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 LAMTOR1Q6IAA8 161 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 TMEM14EPQ6UXP3 125 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 RHPN1-AS1Q9BWJ2 59 aa9.26□□□□□ -0.93
UPF1-203ENST00000594504 LSM5Q9Y4Y9 91 aaKnown RBP9.26□□□□□ -0.93
UPF1-203ENST00000594504 PMS2P5A8MQ11 134 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 CHEK1O14757 476 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 SSNA1O43805 119 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 LY6G6CO95867 125 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 RD3LP0DJH9 198 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 PVALBP20472 110 aaPredicted RBP9.25□□□□□ -0.93
UPF1-203ENST00000594504 NPPCP23582 126 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 S100A10P60903 97 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 CYCSP99999 105 aaKnown RBP9.25□□□□□ -0.93
UPF1-203ENST00000594504 OR8G2PQ6IF36 304 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 ACOT7LQ6ZUV0 252 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 THAP8Q8NA92 274 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 OR10P1Q8NGE3 313 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 METTL26Q96S19 204 aa9.25□□□□□ -0.93
UPF1-203ENST00000594504 IGKV1D-37A0A075B6S9 117 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 IGHV3-49A0A0A0MS15 119 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 A0A1W2PS18 150 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 CXorf65A6NEN9 183 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 TSPAN4O14817 238 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 SPRY2O43597 315 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 SIX6O95475 246 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 IL4P05112 153 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 CD5P06127 495 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 METTL15P1P0C7V9 234 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 PSG1P11464 419 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 RPL35AP18077 110 aaKnown RBP9.24□□□□□ -0.93
UPF1-203ENST00000594504 CRYBB3P26998 211 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 DLK1P80370 383 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 AKR1C1Q04828 323 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 RAB32Q13637 225 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 DEFB135Q30KP9 77 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 OR51G1Q8NGK1 321 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 LINC00476Q8WZB0 136 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 NARS2Q96I59 477 aaKnown RBP9.24□□□□□ -0.93
UPF1-203ENST00000594504 RNF2Q99496 336 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 TRGV9Q99603 122 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 SPAG8Q99932 426 aaPredicted RBP9.24□□□□□ -0.93
UPF1-203ENST00000594504 NMES1Q9C002 83 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 C11orf1Q9H5F2 150 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 TMEM231Q9H6L2 316 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 VSIRQ9H7M9 311 aa9.24□□□□□ -0.93
UPF1-203ENST00000594504 IGKV1OR2-108A0A075B7D4 117 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 IGHV3OR16-13A0A075B7E8 117 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 IGHV3-74A0A0B4J1X5 117 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 FNDC10F2Z333 226 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 CCNKO75909 580 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 BCAP31P51572 246 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 CAV2P51636 162 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 ZNF90Q03938 601 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 ZNF124Q15973 351 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 RGS21Q2M5E4 152 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 ODF3L2Q3SX64 289 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 TMEM144Q7Z5S9 345 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 WFDC3Q8IUB2 231 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 ST8SIA2Q92186 375 aa9.23□□□□□ -0.93
UPF1-203ENST00000594504 PLECQ15149 4684 aaKnown RBP9.22□□□□□ -0.93
UPF1-203ENST00000594504 SMCO3A2RU48 225 aa9.22□□□□□ -0.93
UPF1-203ENST00000594504 APOHP02749 345 aaPredicted RBP9.22□□□□□ -0.93
UPF1-203ENST00000594504 HNRNPCP07910 306 aaKnown RBP eCLIP9.22□□□□□ -0.93
UPF1-203ENST00000594504 H2BFSP57053 126 aa9.22□□□□□ -0.93
UPF1-203ENST00000594504 RRAS2P62070 204 aaPredicted RBP9.22□□□□□ -0.93
UPF1-203ENST00000594504 USF2Q15853 346 aaPredicted RBP9.22□□□□□ -0.93
UPF1-203ENST00000594504 APRG1Q8IVJ8 170 aa9.22□□□□□ -0.93
UPF1-203ENST00000594504 RNF125Q96EQ8 232 aa9.22□□□□□ -0.93
UPF1-203ENST00000594504 GGACTQ9BVM4 153 aa9.22□□□□□ -0.93
UPF1-203ENST00000594504 LYRM2Q9NU23 88 aaPredicted RBP9.22□□□□□ -0.93
UPF1-203ENST00000594504 MGAT4CQ9UBM8 478 aa9.22□□□□□ -0.93
UPF1-203ENST00000594504 ALG5Q9Y673 324 aa9.22□□□□□ -0.93
UPF1-203ENST00000594504 OR4C46A6NHA9 309 aa9.21□□□□□ -0.94
UPF1-203ENST00000594504 DEDDO75618 318 aa9.21□□□□□ -0.94
UPF1-203ENST00000594504 CFDP00746 253 aaPredicted RBP9.21□□□□□ -0.94
UPF1-203ENST00000594504 RLN2P04090 185 aa9.21□□□□□ -0.94
UPF1-203ENST00000594504 NUP62P37198 522 aaPredicted RBP9.21□□□□□ -0.94
UPF1-203ENST00000594504 APOC4P55056 127 aa9.21□□□□□ -0.94
UPF1-203ENST00000594504 ARL16Q0P5N6 197 aa9.21□□□□□ -0.94
UPF1-203ENST00000594504 FAM90A2PQ658T7 463 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms