RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 NMNAT1Q9HAN9 279 aaPredicted RBP0.93□□□□□ -2.26
SMCHD1-204ENST00000581226 ARMC1Q9NVT9 282 aa0.93□□□□□ -2.26
SMCHD1-204ENST00000581226 EPDR1Q9UM22 224 aa0.93□□□□□ -2.26
SMCHD1-204ENST00000581226 NUP98P52948 1817 aa0.93□□□□□ -2.26
SMCHD1-204ENST00000581226 TRAV12-1A0A0B4J245 112 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 UBL3O95164 117 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 MGST1P10620 155 aaKnown RBP0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 S100A4P26447 101 aaKnown RBP0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 PIGPP57054 158 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 YPEL3P61236 119 aaPredicted RBP0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 AKIRIN2Q53H80 203 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 SPANXN5Q5MJ07 72 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 GOLT1AQ6ZVE7 132 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 EXOC3-AS1Q8N2X6 119 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 SLAMF6Q96DU3 332 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 SERPINI1Q99574 410 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 C9orf16Q9BUW7 83 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 KIFC1Q9BW19 673 aa0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 FAM32AQ9Y421 112 aaKnown RBP0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 MYO5AQ9Y4I1 1855 aaKnown RBP0.92□□□□□ -2.26
SMCHD1-204ENST00000581226 ADGRB2O60241 1585 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 ALPK3Q96L96 1907 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 TRBV19A0A075B6N1 114 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 BAALC-AS2P0C853 105 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 HSPE1P61604 102 aaKnown RBP0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 DEFB115Q30KQ5 88 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 BRMS1LQ5PSV4 323 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 DHRS4L2Q6PKH6 230 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 C12orf29Q8N999 325 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 HIST1H2BLQ99880 126 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 TMEM126AQ9H061 195 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 TRABDQ9H4I3 376 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 ENY2Q9NPA8 101 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 OR5AC2Q9NZP5 309 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 HS3ST2Q9Y278 367 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 ARL2BPQ9Y2Y0 163 aa0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 UTP11Q9Y3A2 253 aaKnown RBP0.91□□□□□ -2.26
SMCHD1-204ENST00000581226 LOC110117498A0A087WWA1 95 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 FUOMA2VDF0 154 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 B4DSR2 109 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 CYB5BO43169 146 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 ERP29P30040 261 aaKnown RBP0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 BRS3P32247 399 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 DYNLT1P63172 113 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 RHOGP84095 191 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 SPA17Q15506 151 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 RRN3P1Q2M238 152 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 PHF13Q86YI8 300 aaPredicted RBP0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 OR4C6Q8NH72 309 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 GNPDA2Q8TDQ7 276 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 ZNF418Q8TF45 676 aaPredicted RBP0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 BTF3L4Q96K17 158 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 BCL2L10Q9HD36 194 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 OPTCQ9UBM4 332 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 C22orf24Q9Y442 160 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 UNC13CQ8NB66 2214 aa0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 N4BP2Q86UW6 1770 aaPredicted RBP0.9□□□□□ -2.27
SMCHD1-204ENST00000581226 FMN1Q68DA7 1419 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 MIA2Q96PC5 1412 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 M0R378 163 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 ANP32AP39687 249 aaKnown RBP0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 RAB4BP61018 213 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 ARF6P62330 175 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 ESRGQ1W209 222 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 C1orf137Q5JT78 98 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 PXT1Q8NFP0 134 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 PRADC1Q9BSG0 188 aa0.89□□□□□ -2.27
SMCHD1-204ENST00000581226 CHD3Q12873 2000 aaKnown RBP0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 C7orf71A4D174 169 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 J3QRK9 145 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 ZNF93P35789 620 aaPredicted RBP0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 HACD4Q5VWC8 232 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 SOSTDC1Q6X4U4 206 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 LINC00471Q8N535 108 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 CDC26Q8NHZ8 85 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 SFT2D1Q8WV19 159 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 OBSCN-AS1Q96MR7 158 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 SNURFQ9Y675 71 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 CHCHD2Q9Y6H1 151 aaPredicted RBP0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 MYO18AQ92614 2054 aaKnown RBP0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 EML5Q05BV3 1969 aa0.88□□□□□ -2.27
SMCHD1-204ENST00000581226 TRBV6-8A0A0A6YYG3 113 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 TAX1BP3O14907 124 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 HMGB3O15347 200 aaKnown RBP0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 ROMO1P60602 79 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 MRPS25P82663 173 aaKnown RBP0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 FAM172AQ8WUF8 416 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 PSTPIP2Q9H939 334 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 NHP2Q9NX24 153 aaKnown RBP0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 MED29Q9NX70 200 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 SLC35A3Q9Y2D2 325 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 ARL5AQ9Y689 179 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 PTPRFP10586 1907 aa0.87□□□□□ -2.27
SMCHD1-204ENST00000581226 GEMIN2O14893 280 aaKnown RBP0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 SULT1B1O43704 296 aa0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 GADD45GO95257 159 aa0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 RHOBP62745 196 aa0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 PDZD9Q8IXQ8 264 aa0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 SLC30A7Q8NEW0 376 aa0.86□□□□□ -2.27
SMCHD1-204ENST00000581226 PRNDQ9UKY0 176 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms