RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CEP295Q9C0D2 2601 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 NAV3Q8IVL0 2385 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 APELAP0DMC3 54 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 PKIAP61925 76 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 CX3CL1P78423 397 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 TMEM256Q8N2U0 113 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 STXBP6Q8NFX7 210 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 PERPQ96FX8 193 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 LINC00479Q96M42 142 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 RAB1BQ9H0U4 201 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 MRPL18Q9H0U6 180 aaKnown RBP8.05□□□□□ -1.12
VPS53-220ENST00000576149 MALRD1Q5VYJ5 2156 aa8.05□□□□□ -1.12
VPS53-220ENST00000576149 TRBV9A0A0B4J1U6 114 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 A0A1B0GUS0 222 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 TMEM238C9JI98 176 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 H0Y8G0 127 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 FRMD6-AS1P0C7T7 363 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 ORM2P19652 201 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 MYCNOSP40205 109 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 IBA57Q5T440 356 aaKnown RBP8.04□□□□□ -1.12
VPS53-220ENST00000576149 OR1B1Q8NGR6 318 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 GNB1LQ9BYB4 327 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 FBXL15Q9H469 300 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 ONECUT1Q9UBC0 465 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 PEX7O00628 323 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 NUPR1O60356 82 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 LY6HO94772 140 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 MGST1P10620 155 aaKnown RBP8.04□□□□□ -1.12
VPS53-220ENST00000576149 IER3P46695 156 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 FXYD3Q14802 87 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 LDLRAD2Q5SZI1 272 aa8.04□□□□□ -1.12
VPS53-220ENST00000576149 SRSF12Q8WXF0 261 aaKnown RBP8.04□□□□□ -1.12
VPS53-220ENST00000576149 IGHV3-21A0A0B4J1V1 117 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 GRIFINA4D1Z8 144 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 SNURFLB1AK76 121 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 FCN1O00602 326 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 PLP1P60201 277 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 RPL19P84098 196 aaKnown RBP8.03□□□□□ -1.12
VPS53-220ENST00000576149 TPTE2P1Q5T6R2 138 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 CBLN4Q9NTU7 201 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 TP53TG3Q9ULZ0 132 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 PLXNB1O43157 2135 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 SMIM27A0A1W2PRY6 76 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 TSTD3H0UI37 97 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 HYPMO75409 117 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 SCGB1D1O95968 90 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 RANP62826 216 aaKnown RBP8.03□□□□□ -1.12
VPS53-220ENST00000576149 C11orf71Q6IPW1 123 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 NHLRC2Q8NBF2 726 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 OR11H6Q8NGC7 330 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 DPF1Q92782 380 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 TIMD4Q96H15 378 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 SRSF8Q9BRL6 282 aaKnown RBP8.03□□□□□ -1.12
VPS53-220ENST00000576149 PIMREGQ9BSJ6 248 aa8.03□□□□□ -1.12
VPS53-220ENST00000576149 TIMM23O14925 209 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 PAX1P15863 534 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 CRISP2P16562 243 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 ARF6P62330 175 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 BAGE2Q86Y30 109 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 PRO1933Q9H354 126 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 ZNF705GA8MUZ8 300 aaPredicted RBP8.02□□□□□ -1.13
VPS53-220ENST00000576149 I3L2K1 104 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 SAP30O75446 220 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 MT-ND6P03923 174 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 SNRPCP09234 159 aaKnown RBP8.02□□□□□ -1.13
VPS53-220ENST00000576149 IGLC1P0CG04 106 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 ESDP10768 282 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 HTR1DP28221 377 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 TCL1AP56279 114 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 PLGLAQ15195 96 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 COX19Q49B96 90 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 FAM231DQ6ZW35 169 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 VCX2Q9H322 139 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 GSX1Q9H4S2 264 aaPredicted RBP8.02□□□□□ -1.13
VPS53-220ENST00000576149 SERTAD4Q9NUC0 356 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 DPM3Q9P2X0 92 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 EPDR1Q9UM22 224 aa8.02□□□□□ -1.13
VPS53-220ENST00000576149 SPINK4O60575 86 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 NBEAP1P0C6P0 100 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 GP9P14770 177 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 LINC00310P59036 64 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 DEFA6Q01524 100 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 Q0VG73 95 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 TMEM183BQ1AE95 376 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 TMEM136Q6ZRR5 245 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 CMTM2Q8TAZ6 248 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 BLNKQ8WV28 456 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 NEU4Q8WWR8 484 aaPredicted RBP8.01□□□□□ -1.13
VPS53-220ENST00000576149 CFHR4Q92496 578 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 WNT10AQ9GZT5 417 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 KLF12Q9Y4X4 402 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 PGPA6NDG6 321 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 M0R1W7 72 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 PSG1P11464 419 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 DDTP30046 118 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 GNG5P63218 68 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 NHLH1Q02575 133 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 MMDQ15546 238 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 IQCJQ1A5X6 159 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 PRSS57Q6UWY2 283 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms