RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 LAIR2Q6ISS4 152 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 FOXI2Q6ZQN5 318 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 Q6ZRN7 208 aaPredicted RBP4.02□□□□□ -1.77
VPS53-208ENST00000570650 TMEM17Q86X19 198 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 BPIFB6Q8NFQ5 453 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 OR4B1Q8NGF8 309 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 LGALS14Q8TCE9 139 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 FCAMRQ8WWV6 532 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 SLC35B3Q9H1N7 401 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 SCPEP1Q9HB40 452 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 FKBP14Q9NWM8 211 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 ZNF586Q9NXT0 402 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 DAPK2Q9UIK4 370 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 LSM2Q9Y333 95 aaKnown RBP4.02□□□□□ -1.77
VPS53-208ENST00000570650 TRAV30A0A087WSZ9 112 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 CORTO00230 105 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 CASQ2O14958 399 aaPredicted RBP4.01□□□□□ -1.77
VPS53-208ENST00000570650 PGLYRP1O75594 196 aaPredicted RBP4.01□□□□□ -1.77
VPS53-208ENST00000570650 ATP5HO75947 161 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 SCGNO76038 276 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 RORCP51449 518 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 DEFB1P60022 68 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 HERV-K104P61576 105 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 HSPE1P61604 102 aaKnown RBP4.01□□□□□ -1.77
VPS53-208ENST00000570650 PSG9Q00887 426 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 FABP5Q01469 135 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 ZNF79Q15937 498 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 TMEM69Q5SWH9 247 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 SPATA31B1PQ5VZV4 182 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 SIGLEC15Q6ZMC9 328 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 C10orf67Q8IYJ2 551 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 C8orf59Q8N0T1 100 aaPredicted RBP4.01□□□□□ -1.77
VPS53-208ENST00000570650 SPARTQ8N0X7 666 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 DHRSXQ8N5I4 330 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 BEST4Q8NFU0 473 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 OR4C16Q8NGL9 310 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 OR4X1Q8NH49 305 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 OR4A16Q8NH70 328 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 UHRF2Q96PU4 802 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 TMEM208Q9BTX3 173 aa4.01□□□□□ -1.77
VPS53-208ENST00000570650 MRPS16Q9Y3D3 137 aaKnown RBP4.01□□□□□ -1.77
VPS53-208ENST00000570650 SRRM2Q9UQ35 2752 aaKnown RBP4□□□□□ -1.77
VPS53-208ENST00000570650 A0A087WTM6 91 aa4□□□□□ -1.77
VPS53-208ENST00000570650 TRAV1-2A0A0B4J238 106 aa4□□□□□ -1.77
VPS53-208ENST00000570650 CBY3A6NI87 242 aa4□□□□□ -1.77
VPS53-208ENST00000570650 ZNF705GA8MUZ8 300 aaPredicted RBP4□□□□□ -1.77
VPS53-208ENST00000570650 BUB3O43684 328 aa4□□□□□ -1.77
VPS53-208ENST00000570650 GSTZ1O43708 216 aaPredicted RBP4□□□□□ -1.77
VPS53-208ENST00000570650 IGKV1-17P01599 117 aa4□□□□□ -1.77
VPS53-208ENST00000570650 HSMCR30P0CW71 290 aa4□□□□□ -1.77
VPS53-208ENST00000570650 MYL9P24844 172 aa4□□□□□ -1.77
VPS53-208ENST00000570650 SNCAP37840 140 aa4□□□□□ -1.77
VPS53-208ENST00000570650 ID1P41134 155 aa4□□□□□ -1.77
VPS53-208ENST00000570650 OPRK1P41145 380 aa4□□□□□ -1.77
VPS53-208ENST00000570650 SUB1P53999 127 aaKnown RBP eCLIP4□□□□□ -1.77
VPS53-208ENST00000570650 HAMPP81172 84 aa4□□□□□ -1.77
VPS53-208ENST00000570650 ESRGQ1W209 222 aa4□□□□□ -1.77
VPS53-208ENST00000570650 TIGITQ495A1 244 aa4□□□□□ -1.77
VPS53-208ENST00000570650 H2BFWTQ7Z2G1 175 aa4□□□□□ -1.77
VPS53-208ENST00000570650 COQ8AQ8NI60 647 aa4□□□□□ -1.77
VPS53-208ENST00000570650 DEFB104AQ8WTQ1 72 aa4□□□□□ -1.77
VPS53-208ENST00000570650 Q8WTZ3 238 aa4□□□□□ -1.77
VPS53-208ENST00000570650 GNPNAT1Q96EK6 184 aaPredicted RBP4□□□□□ -1.77
VPS53-208ENST00000570650 IGF2BP2-AS1Q96M15 143 aa4□□□□□ -1.77
VPS53-208ENST00000570650 LINC00052Q96N35 136 aa4□□□□□ -1.77
VPS53-208ENST00000570650 ABHD1Q96SE0 405 aa4□□□□□ -1.77
VPS53-208ENST00000570650 FNDC4Q9H6D8 234 aaPredicted RBP4□□□□□ -1.77
VPS53-208ENST00000570650 ACOT13Q9NPJ3 140 aa4□□□□□ -1.77
VPS53-208ENST00000570650 MRPL36Q9P0J6 103 aaKnown RBP4□□□□□ -1.77
VPS53-208ENST00000570650 INS-IGF2F8WCM5 200 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 EBAG9O00559 213 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 RGS10O43665 173 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 PRM2P04554 102 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 GNAO1P09471 354 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 IGLC1P0CG04 106 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 DNAH10OSP0CZ25 163 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 RNASE2P10153 161 aaKnown RBP3.99□□□□□ -1.77
VPS53-208ENST00000570650 RAB3BP20337 219 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 TSPOP30536 169 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 RPL5P46777 297 aaKnown RBP3.99□□□□□ -1.77
VPS53-208ENST00000570650 PSMB3P49720 205 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 PAX9P55771 341 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 B2MP61769 119 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 DHODHQ02127 395 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 MLLT11Q13015 90 aaPredicted RBP3.99□□□□□ -1.77
VPS53-208ENST00000570650 FCN2Q15485 313 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 SPINK9Q5DT21 86 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 FAM78BQ5VT40 261 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 EBLN2Q6P2I7 272 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 HOGA1Q86XE5 327 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 CMTM1Q8IZ96 169 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 SLC35G3Q8N808 338 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 OR1S2Q8NGQ3 325 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 OR6F1Q8NGZ6 308 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 RXFP4Q8TDU9 374 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 FCGR1BQ92637 280 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 DAZAP1Q96EP5 407 aaKnown RBP3.99□□□□□ -1.77
VPS53-208ENST00000570650 SEC22AQ96IW7 307 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 TMEM70Q9BUB7 260 aa3.99□□□□□ -1.77
VPS53-208ENST00000570650 S100A14Q9HCY8 104 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms