RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CEACAM4O75871 244 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 NDUFA3O95167 84 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 PRR31Q5SQ13 230 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 SLC25A39Q9BZJ4 359 aaPredicted RBP12.57□□□□□ -0.4
CIITA-204ENST00000570546 FAM71F2Q6NXP2 309 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 EXOC3-AS1Q8N2X6 119 aa12.57□□□□□ -0.4
CIITA-204ENST00000570546 RNF166Q96A37 237 aaPredicted RBP12.57□□□□□ -0.4
CIITA-204ENST00000570546 IGHV1-3A0A0C4DH29 117 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 MBD3L4A6NDZ8 208 aaPredicted RBP12.56□□□□□ -0.4
CIITA-204ENST00000570546 MBD3L3A6NE82 208 aaPredicted RBP12.56□□□□□ -0.4
CIITA-204ENST00000570546 MBD3L5A6NJ08 208 aaPredicted RBP12.56□□□□□ -0.4
CIITA-204ENST00000570546 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.56□□□□□ -0.4
CIITA-204ENST00000570546 MBD3L2Q8NHZ7 208 aaPredicted RBP12.56□□□□□ -0.4
CIITA-204ENST00000570546 SPCS1Q9Y6A9 102 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 A0A0G2JLM5 398 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 TCRAP04437 139 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 ZNF726P1Q15940 193 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 NUP35Q8NFH5 326 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 HEATR5AQ86XA9 2040 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 BEND2Q8NDZ0 799 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 MRPL16Q9NX20 251 aaKnown RBP12.56□□□□□ -0.4
CIITA-204ENST00000570546 NUTF2P61970 127 aaKnown RBP12.56□□□□□ -0.4
CIITA-204ENST00000570546 RHOGP84095 191 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 PAPPA-AS1Q5QFB9 102 aa12.56□□□□□ -0.4
CIITA-204ENST00000570546 PMS2P5A8MQ11 134 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 FNDC10F2Z333 226 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 IGKV1-39P01597 117 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 IGKV1D-39P04432 117 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 THBDP07204 575 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 RNASE2P10153 161 aaKnown RBP12.55□□□□□ -0.4
CIITA-204ENST00000570546 ZNF664Q8N3J9 261 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 ZNF256Q9Y2P7 627 aaPredicted RBP12.55□□□□□ -0.4
CIITA-204ENST00000570546 H3BUT2 72 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 WNT2P09544 360 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 VKORC1Q9BQB6 163 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 ST20Q9HBF5 79 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 CRIM1Q9NZV1 1036 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 ZNF503-AS2A6NEH8 195 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 PAX1P15863 534 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 LMO1P25800 156 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 SRSF6Q13247 344 aaKnown RBP12.55□□□□□ -0.4
CIITA-204ENST00000570546 RRN3P1Q2M238 152 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 FBLN7Q53RD9 439 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 SLX1AQ9BQ83 275 aa12.55□□□□□ -0.4
CIITA-204ENST00000570546 TRIOBPQ9H2D6 2365 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.54□□□□□ -0.4
CIITA-204ENST00000570546 CACNG7P62955 275 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 KIR3DL3Q8N743 410 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 IL15RAQ13261 267 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 CENPVQ7Z7K6 275 aaPredicted RBP12.54□□□□□ -0.4
CIITA-204ENST00000570546 A0A1B0GWJ7 208 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 NPFFO15130 113 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 IGHV3-11P01762 117 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 PFN1P07737 140 aaKnown RBP12.54□□□□□ -0.4
CIITA-204ENST00000570546 PPIFP30405 207 aaKnown RBP12.54□□□□□ -0.4
CIITA-204ENST00000570546 ADIPOQQ15848 244 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 MLANAQ16655 118 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 WDR86Q86TI4 376 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 ZNF329Q86UD4 541 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 FAM169BQ8N8A8 192 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 OR4X2Q8NGF9 303 aa12.54□□□□□ -0.4
CIITA-204ENST00000570546 C19orf67A6NJJ6 358 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 PPBPP02775 128 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 NXT2Q9NPJ8 142 aaKnown RBP12.53□□□□□ -0.4
CIITA-204ENST00000570546 IGKV1-16P04430 117 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 ZNF672Q499Z4 452 aaPredicted RBP12.53□□□□□ -0.4
CIITA-204ENST00000570546 TMEM190Q8WZ59 177 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 IGKV2-40A0A087WW87 121 aaPredicted RBP12.53□□□□□ -0.4
CIITA-204ENST00000570546 IGKV2D-40P01614 121 aaPredicted RBP12.53□□□□□ -0.4
CIITA-204ENST00000570546 FAM168AQ92567 244 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 GEMIN7Q9H840 131 aaKnown RBP12.53□□□□□ -0.4
CIITA-204ENST00000570546 NDUFS6O75380 124 aaKnown RBP12.53□□□□□ -0.4
CIITA-204ENST00000570546 C3orf79P0CE67 100 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 EVI2AP22794 236 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 ZNF474Q6S9Z5 364 aaPredicted RBP12.53□□□□□ -0.4
CIITA-204ENST00000570546 DENND4CQ5VZ89 1909 aa12.53□□□□□ -0.4
CIITA-204ENST00000570546 CIRBPQ14011 172 aaKnown RBP12.52□□□□□ -0.4
CIITA-204ENST00000570546 TPTE2P1Q5T6R2 138 aa12.52□□□□□ -0.4
CIITA-204ENST00000570546 C5orf30Q96GV9 206 aa12.52□□□□□ -0.4
CIITA-204ENST00000570546 ITGB1BP1O14713 200 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 ZNF124Q15973 351 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 A0A0G2JNJ9 132 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 C2orf88Q9BSF0 95 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 JKAMPQ9P055 326 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 Q9UFV3 132 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 NOTCH4Q99466 2003 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 DNAJC13O75165 2243 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 NPIPB5A8MRT5 1133 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 H7C1H1 209 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 SRSF1Q07955 248 aaKnown RBP eCLIP12.52□□□□□ -0.41
CIITA-204ENST00000570546 RNF5Q99942 180 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 MS4A6AQ9H2W1 248 aa12.52□□□□□ -0.41
CIITA-204ENST00000570546 DPM2O94777 84 aa12.51□□□□□ -0.41
CIITA-204ENST00000570546 MRPL27Q9P0M9 148 aaKnown RBP12.51□□□□□ -0.41
CIITA-204ENST00000570546 NUP210Q8TEM1 1887 aaPredicted RBP12.51□□□□□ -0.41
CIITA-204ENST00000570546 IFI27L1Q96BM0 104 aa12.51□□□□□ -0.41
CIITA-204ENST00000570546 FNDC4Q9H6D8 234 aaPredicted RBP12.51□□□□□ -0.41
CIITA-204ENST00000570546 BEX4Q9NWD9 120 aaPredicted RBP12.51□□□□□ -0.41
CIITA-204ENST00000570546 CD33P20138 364 aa12.51□□□□□ -0.41
CIITA-204ENST00000570546 ERVK11-1P61568 191 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms