RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 YPEL3P61236 119 aaPredicted RBP12.32□□□□□ -0.44
CLK3-227ENST00000570296 HERV-K104P61576 105 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 FABP5Q01469 135 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 OR5I1Q13606 314 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 H2BFWTQ7Z2G1 175 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 OR1S2Q8NGQ3 325 aa12.32□□□□□ -0.44
CLK3-227ENST00000570296 WDR12Q9GZL7 423 aaKnown RBP12.32□□□□□ -0.44
CLK3-227ENST00000570296 TRAV1-2A0A0B4J238 106 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 TRDV1A0A1B0GX56 115 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 F6UB75 175 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 MYL9P24844 172 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 LINC00528Q8N1L1 170 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 OR10J6PQ8NGY7 276 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 SEC22AQ96IW7 307 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 FAM212BQ9NTI7 297 aaPredicted RBP12.31□□□□□ -0.44
CLK3-227ENST00000570296 PKHD1L1Q86WI1 4243 aa12.31□□□□□ -0.44
CLK3-227ENST00000570296 A0A0J9YY99 117 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 SOCS3O14543 225 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 IL4P05112 153 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 IGLC1P0CG04 106 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 SMIM18P0DKX4 95 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 RNASE2P10153 161 aaKnown RBP12.3□□□□□ -0.44
CLK3-227ENST00000570296 NUP62P37198 522 aaPredicted RBP12.3□□□□□ -0.44
CLK3-227ENST00000570296 DHODHQ02127 395 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 MLANAQ16655 118 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 SPINK9Q5DT21 86 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 AMTNQ6UX39 209 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 CMTM1Q8IZ96 169 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 OR6F1Q8NGZ6 308 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 KLK11Q9UBX7 282 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 TNFRSF18Q9Y5U5 241 aa12.3□□□□□ -0.44
CLK3-227ENST00000570296 IGLV5-52A0A0A0MRZ9 124 aa12.29□□□□□ -0.44
CLK3-227ENST00000570296 ZNF701M0R085 212 aaPredicted RBP12.29□□□□□ -0.44
CLK3-227ENST00000570296 AZU1P20160 251 aa12.29□□□□□ -0.44
CLK3-227ENST00000570296 SLC35G3Q8N808 338 aa12.29□□□□□ -0.44
CLK3-227ENST00000570296 DOK5Q9P104 306 aa12.29□□□□□ -0.44
CLK3-227ENST00000570296 TIMM8BQ9Y5J9 83 aaPredicted RBP12.29□□□□□ -0.44
CLK3-227ENST00000570296 LOC100506127A0A0U1RQW1 187 aa12.28□□□□□ -0.44
CLK3-227ENST00000570296 ISLRO14498 428 aa12.28□□□□□ -0.44
CLK3-227ENST00000570296 C22orf42Q6IC83 251 aa12.28□□□□□ -0.44
CLK3-227ENST00000570296 GPR141Q7Z602 305 aa12.28□□□□□ -0.44
CLK3-227ENST00000570296 OR5AP2Q8NGF4 316 aa12.28□□□□□ -0.44
CLK3-227ENST00000570296 NTN5Q8WTR8 489 aaPredicted RBP12.28□□□□□ -0.44
CLK3-227ENST00000570296 TXNL4BQ9NX01 149 aaKnown RBP12.28□□□□□ -0.44
CLK3-227ENST00000570296 CRXO43186 299 aaPredicted RBP12.27□□□□□ -0.45
CLK3-227ENST00000570296 C1QBP02746 253 aa12.27□□□□□ -0.45
CLK3-227ENST00000570296 RAB3BP20337 219 aa12.27□□□□□ -0.45
CLK3-227ENST00000570296 OR10J1P30954 320 aa12.27□□□□□ -0.45
CLK3-227ENST00000570296 RPRMQ9NS64 109 aa12.27□□□□□ -0.45
CLK3-227ENST00000570296 GPR31O00270 319 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 ADAP1O75689 374 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 SAMD13Q5VXD3 122 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 GPR146Q96CH1 333 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 YIPF6Q96EC8 236 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 C16orf74Q96GX8 76 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 FAM30AQ9NZY2 134 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 PFDN2Q9UHV9 154 aa12.26□□□□□ -0.45
CLK3-227ENST00000570296 DHRS11Q6UWP2 260 aa12.25□□□□□ -0.45
CLK3-227ENST00000570296 FUNDC2Q9BWH2 189 aa12.25□□□□□ -0.45
CLK3-227ENST00000570296 M0R2Z0 102 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 IGKV1-39P01597 117 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 IGKV1D-39P04432 117 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 HOXA5P20719 270 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 RND2P52198 227 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 SPINK13Q1W4C9 94 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 BSXQ3C1V8 233 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 PRSS54Q6PEW0 395 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 TMEM256Q8N2U0 113 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 OR11H7Q8NGC8 314 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 MRGPRFQ96AM1 343 aa12.24□□□□□ -0.45
CLK3-227ENST00000570296 NOP10Q9NPE3 64 aaKnown RBP12.24□□□□□ -0.45
CLK3-227ENST00000570296 NOL3O60936 208 aaKnown RBP12.23□□□□□ -0.45
CLK3-227ENST00000570296 TOMM40O96008 361 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 RD3LP0DJH9 198 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 SLC25A4P12235 298 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 TAS2R60P59551 318 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 SFXN4Q6P4A7 337 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 ZNF493Q6ZR52 646 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 LINC00612Q8N6U2 182 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 ZNF2Q9BSG1 426 aaPredicted RBP12.23□□□□□ -0.45
CLK3-227ENST00000570296 EHFQ9NZC4 300 aa12.23□□□□□ -0.45
CLK3-227ENST00000570296 A0A096LPF7 62 aa12.22□□□□□ -0.45
CLK3-227ENST00000570296 NXPH4O95158 308 aa12.22□□□□□ -0.45
CLK3-227ENST00000570296 LSM3P62310 102 aaKnown RBP12.22□□□□□ -0.45
CLK3-227ENST00000570296 GPR107Q5VW38 600 aa12.22□□□□□ -0.45
CLK3-227ENST00000570296 BAP18Q8IXM2 172 aa12.22□□□□□ -0.45
CLK3-227ENST00000570296 SLC24A4Q8NFF2 622 aa12.22□□□□□ -0.45
CLK3-227ENST00000570296 ENY2Q9NPA8 101 aa12.22□□□□□ -0.45
CLK3-227ENST00000570296 TRAV9-2A0A087WT02 112 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 NPIPB6E9PJ23 425 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 DUSP14O95147 198 aaKnown RBP12.21□□□□□ -0.45
CLK3-227ENST00000570296 FCER2P06734 321 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 S100GP29377 79 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 SDC2P34741 201 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 CBX5P45973 191 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 C1orf194Q5T5A4 169 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 OR8G2PQ6IF36 304 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 TMEM144Q7Z5S9 345 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 OR51G1Q8NGK1 321 aa12.21□□□□□ -0.45
CLK3-227ENST00000570296 C20orf173Q96LM9 149 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms