RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 MINOS1-NBL1R4GNA1 71 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 XKRY2A2RUG3 117 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 PEX7O00628 323 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 FABP4P15090 132 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 LMO4P61968 165 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 KLF17Q5JT82 389 aaPredicted RBP16.04■□□□□ 0.16
CLN3-230ENST00000568076 COA6Q5JTJ3 125 aaKnown RBP16.04■□□□□ 0.16
CLN3-230ENST00000568076 ASPHD1Q5U4P2 390 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 BLNKQ8WV28 456 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 TRAPPC1Q9Y5R8 145 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 ABCA1O95477 2261 aa16.04■□□□□ 0.16
CLN3-230ENST00000568076 OOSP1A8MZH6 123 aa16.03■□□□□ 0.16
CLN3-230ENST00000568076 TAS2R60P59551 318 aa16.03■□□□□ 0.16
CLN3-230ENST00000568076 RANP62826 216 aaKnown RBP16.03■□□□□ 0.16
CLN3-230ENST00000568076 NDPQ00604 133 aa16.03■□□□□ 0.16
CLN3-230ENST00000568076 EBI3Q14213 229 aa16.03■□□□□ 0.16
CLN3-230ENST00000568076 CSMD1Q96PZ7 3565 aa16.03■□□□□ 0.16
CLN3-230ENST00000568076 OVOL3O00110 214 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 LYZP61626 148 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 GNG5P63218 68 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 CX3CL1P78423 397 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 NHLRC2Q8NBF2 726 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 TBX15Q96SF7 602 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 HIST1H2BLQ99880 126 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 RASL11BQ9BPW5 248 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 OSTCQ9NRP0 149 aa16.02■□□□□ 0.16
CLN3-230ENST00000568076 TRAV34A0A0B4J273 112 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 TOX4O94842 621 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 NBEAP1P0C6P0 100 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 PDLIM4P50479 330 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 RPEL1Q2QD12 228 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 ZNF562Q6V9R5 426 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 AJUBAQ96IF1 538 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 HIGD1AQ9Y241 93 aa16.02■□□□□ 0.15
CLN3-230ENST00000568076 SVEP1Q4LDE5 3571 aa16.01■□□□□ 0.15
CLN3-230ENST00000568076 TRAV9-1A0A075B6T8 112 aa16.01■□□□□ 0.15
CLN3-230ENST00000568076 NCBP2LA6PVI3 153 aaKnown RBP16.01■□□□□ 0.15
CLN3-230ENST00000568076 ISLRO14498 428 aa16.01■□□□□ 0.15
CLN3-230ENST00000568076 MGST1P10620 155 aaKnown RBP16.01■□□□□ 0.15
CLN3-230ENST00000568076 CNN1P51911 297 aaKnown RBP16.01■□□□□ 0.15
CLN3-230ENST00000568076 YPEL3P61236 119 aaPredicted RBP16.01■□□□□ 0.15
CLN3-230ENST00000568076 CFAP46Q8IYW2 2715 aa16.01■□□□□ 0.15
CLN3-230ENST00000568076 FRMD6-AS1P0C7T7 363 aa16■□□□□ 0.15
CLN3-230ENST00000568076 FANCD2OSQ96PS1 177 aa16■□□□□ 0.15
CLN3-230ENST00000568076 MED13LQ71F56 2210 aa16■□□□□ 0.15
CLN3-230ENST00000568076 PGPA6NDG6 321 aa16■□□□□ 0.15
CLN3-230ENST00000568076 H3BTX0 84 aa16■□□□□ 0.15
CLN3-230ENST00000568076 CDPF1Q6NVV7 123 aa16■□□□□ 0.15
CLN3-230ENST00000568076 OR1L6Q8NGR2 347 aa16■□□□□ 0.15
CLN3-230ENST00000568076 ARPC1AQ92747 370 aa16■□□□□ 0.15
CLN3-230ENST00000568076 RBM14Q96PK6 669 aaKnown RBP16■□□□□ 0.15
CLN3-230ENST00000568076 SLC25A39Q9BZJ4 359 aaPredicted RBP16■□□□□ 0.15
CLN3-230ENST00000568076 MRPL27Q9P0M9 148 aaKnown RBP16■□□□□ 0.15
CLN3-230ENST00000568076 EPDR1Q9UM22 224 aa16■□□□□ 0.15
CLN3-230ENST00000568076 RD3LP0DJH9 198 aa15.99■□□□□ 0.15
CLN3-230ENST00000568076 S100A12P80511 92 aa15.99■□□□□ 0.15
CLN3-230ENST00000568076 IBA57Q5T440 356 aaKnown RBP15.99■□□□□ 0.15
CLN3-230ENST00000568076 OR8I2Q8N0Y5 310 aa15.99■□□□□ 0.15
CLN3-230ENST00000568076 GSN-AS1Q9NRJ2 163 aa15.99■□□□□ 0.15
CLN3-230ENST00000568076 S4R3C0 116 aa15.99■□□□□ 0.15
CLN3-230ENST00000568076 NPIPB5A8MRT5 1133 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 IGHV4-39P01824 125 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 HIST1H1BP16401 226 aaKnown RBP15.98■□□□□ 0.15
CLN3-230ENST00000568076 TMEM11P17152 192 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 CBLN1P23435 193 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 UBE2E1P51965 193 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 ZNF600Q6ZNG1 722 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 PACRGQ96M98 296 aaPredicted RBP15.98■□□□□ 0.15
CLN3-230ENST00000568076 TBL2Q9Y4P3 447 aaKnown RBP15.98■□□□□ 0.15
CLN3-230ENST00000568076 WNK2Q9Y3S1 2297 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 IGLV11-55A0A075B6I3 123 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 AMBPP02760 352 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 SLC25A5P05141 298 aaKnown RBP15.98■□□□□ 0.15
CLN3-230ENST00000568076 ADMP35318 185 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 FAM120AOSQ5T036 256 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 AKAP6Q13023 2319 aa15.98■□□□□ 0.15
CLN3-230ENST00000568076 BAGE2Q86Y30 109 aa15.97■□□□□ 0.15
CLN3-230ENST00000568076 TTC9CQ8N5M4 171 aa15.97■□□□□ 0.15
CLN3-230ENST00000568076 EGR2P11161 476 aaPredicted RBP15.96■□□□□ 0.15
CLN3-230ENST00000568076 TMEM183BQ1AE95 376 aa15.96■□□□□ 0.15
CLN3-230ENST00000568076 FABP1P07148 127 aa15.96■□□□□ 0.15
CLN3-230ENST00000568076 Q8N9W7 124 aa15.96■□□□□ 0.15
CLN3-230ENST00000568076 FAM168AQ92567 244 aa15.96■□□□□ 0.15
CLN3-230ENST00000568076 SGK494Q96LW2 274 aa15.96■□□□□ 0.15
CLN3-230ENST00000568076 Q9H3A6 140 aa15.96■□□□□ 0.15
CLN3-230ENST00000568076 ZNF586Q9NXT0 402 aa15.96■□□□□ 0.15
CLN3-230ENST00000568076 IGHV7-81A0A0B4J1V7 117 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 TMEM8BA6NDV4 472 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 F8W735 103 aaPredicted RBP15.95■□□□□ 0.14
CLN3-230ENST00000568076 TOMM40O96008 361 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 SAA4P35542 130 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 TCL1AP56279 114 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 ZNF491Q8N8L2 437 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 C7orf69Q9H7B7 122 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 TMEM14CQ9P0S9 112 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 RPH3ALQ9UNE2 315 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 KLF12Q9Y4X4 402 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 A0A1B0GUS0 222 aa15.95■□□□□ 0.14
CLN3-230ENST00000568076 CA1P00915 261 aaPredicted RBP15.95■□□□□ 0.14
CLN3-230ENST00000568076 IER3P46695 156 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms