RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ERVK11-1P61568 191 aa8.85□□□□□ -0.99
USP3-206ENST00000558157 SMAGPQ0VAQ4 97 aa8.85□□□□□ -0.99
USP3-206ENST00000558157 Q6ZT83 130 aa8.85□□□□□ -0.99
USP3-206ENST00000558157 LINC00173Q6ZV60 143 aa8.85□□□□□ -0.99
USP3-206ENST00000558157 INTS1Q8N201 2190 aaKnown RBP8.85□□□□□ -0.99
USP3-206ENST00000558157 TEX45Q8NA69 505 aa8.85□□□□□ -0.99
USP3-206ENST00000558157 WFDC12Q8WWY7 111 aa8.85□□□□□ -0.99
USP3-206ENST00000558157 NABP2Q9BQ15 211 aa8.85□□□□□ -0.99
USP3-206ENST00000558157 SSBP3Q9BWW4 388 aaPredicted RBP8.85□□□□□ -0.99
USP3-206ENST00000558157 MRPL32Q9BYC8 188 aaKnown RBP8.85□□□□□ -0.99
USP3-206ENST00000558157 CAMPP49913 170 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 RAB9AP51151 201 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 CKS1BP61024 79 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 ERVK-16P61578 105 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 Q5PR19 223 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 TIMM23BQ5SRD1 257 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 S100A7AQ86SG5 101 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 BOD1L2Q8IYS8 172 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 OR2Z1Q8NG97 314 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 ZNF503Q96F45 646 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 ADTRPQ96IZ2 230 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 ACACBO00763 2458 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 C5orf49A4QMS7 147 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 LINC00473A8K010 186 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 C12orf77C9JDV5 145 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 ZNF207O43670 478 aaKnown RBP8.84□□□□□ -0.99
USP3-206ENST00000558157 MC5RP33032 325 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 GPR12P47775 334 aa8.84□□□□□ -0.99
USP3-206ENST00000558157 TEX48A0A1B0GUV7 120 aa8.83□□□□□ -1
USP3-206ENST00000558157 SH2D7A6NKC9 451 aaPredicted RBP8.83□□□□□ -1
USP3-206ENST00000558157 C8orf88P0DMB2 117 aa8.83□□□□□ -1
USP3-206ENST00000558157 FABP6P51161 128 aa8.83□□□□□ -1
USP3-206ENST00000558157 ATP5IP56385 69 aaPredicted RBP8.83□□□□□ -1
USP3-206ENST00000558157 RPL24P83731 157 aaKnown RBP8.83□□□□□ -1
USP3-206ENST00000558157 PSMG4Q5JS54 123 aa8.83□□□□□ -1
USP3-206ENST00000558157 UBALD1Q8TB05 177 aa8.83□□□□□ -1
USP3-206ENST00000558157 RTL8AQ9BWD3 113 aa8.83□□□□□ -1
USP3-206ENST00000558157 GFRA4Q9GZZ7 299 aa8.83□□□□□ -1
USP3-206ENST00000558157 SIGLEC8Q9NYZ4 499 aa8.83□□□□□ -1
USP3-206ENST00000558157 RABAC1Q9UI14 185 aa8.83□□□□□ -1
USP3-206ENST00000558157 SPTA1P02549 2419 aa8.83□□□□□ -1
USP3-206ENST00000558157 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.83□□□□□ -1
USP3-206ENST00000558157 A1L4Q6 167 aa8.83□□□□□ -1
USP3-206ENST00000558157 A8MWL6 223 aa8.83□□□□□ -1
USP3-206ENST00000558157 GOSR1O95249 250 aa8.83□□□□□ -1
USP3-206ENST00000558157 CCNOP22674 350 aa8.83□□□□□ -1
USP3-206ENST00000558157 CXorf67Q86X51 503 aaPredicted RBP8.83□□□□□ -1
USP3-206ENST00000558157 ABHD12Q8N2K0 398 aa8.83□□□□□ -1
USP3-206ENST00000558157 MRAP2Q96G30 205 aa8.83□□□□□ -1
USP3-206ENST00000558157 TCF19Q9Y242 345 aa8.83□□□□□ -1
USP3-206ENST00000558157 AMMECR1Q9Y4X0 333 aaPredicted RBP8.83□□□□□ -1
USP3-206ENST00000558157 A0A0G2JNJ9 132 aa8.82□□□□□ -1
USP3-206ENST00000558157 ACTL6BO94805 426 aa8.82□□□□□ -1
USP3-206ENST00000558157 IGFBP2P18065 325 aa8.82□□□□□ -1
USP3-206ENST00000558157 KIR2DS2P43631 304 aa8.82□□□□□ -1
USP3-206ENST00000558157 CSN1S1P47710 185 aa8.82□□□□□ -1
USP3-206ENST00000558157 UQCRFS1P47985 274 aa8.82□□□□□ -1
USP3-206ENST00000558157 NANOS1Q8WY41 292 aaKnown RBP8.82□□□□□ -1
USP3-206ENST00000558157 PERPQ96FX8 193 aa8.82□□□□□ -1
USP3-206ENST00000558157 ZC2HC1AQ96GY0 325 aa8.82□□□□□ -1
USP3-206ENST00000558157 Q9UFV3 132 aa8.82□□□□□ -1
USP3-206ENST00000558157 RP1L1Q8IWN7 2480 aaPredicted RBP8.82□□□□□ -1
USP3-206ENST00000558157 TPRP12270 2363 aaKnown RBP8.82□□□□□ -1
USP3-206ENST00000558157 F8W1H4 67 aa8.82□□□□□ -1
USP3-206ENST00000558157 SMAD7O15105 426 aaKnown RBP8.82□□□□□ -1
USP3-206ENST00000558157 CT45A6P0DMU7 189 aa8.82□□□□□ -1
USP3-206ENST00000558157 CT45A5P0DMU8 189 aa8.82□□□□□ -1
USP3-206ENST00000558157 CT45A7P0DMV0 189 aa8.82□□□□□ -1
USP3-206ENST00000558157 CT45A1Q5HYN5 189 aa8.82□□□□□ -1
USP3-206ENST00000558157 SAMD5Q5TGI4 173 aa8.82□□□□□ -1
USP3-206ENST00000558157 TRAT1Q6PIZ9 186 aa8.82□□□□□ -1
USP3-206ENST00000558157 MDP1Q86V88 176 aa8.82□□□□□ -1
USP3-206ENST00000558157 CT45A3Q8NHU0 189 aa8.82□□□□□ -1
USP3-206ENST00000558157 SLC25A33Q9BSK2 321 aa8.82□□□□□ -1
USP3-206ENST00000558157 C7orf69Q9H7B7 122 aa8.82□□□□□ -1
USP3-206ENST00000558157 USP24Q9UPU5 2620 aa8.82□□□□□ -1
USP3-206ENST00000558157 PEX7O00628 323 aa8.81□□□□□ -1
USP3-206ENST00000558157 ADH4P08319 380 aa8.81□□□□□ -1
USP3-206ENST00000558157 ZNF474Q6S9Z5 364 aaPredicted RBP8.81□□□□□ -1
USP3-206ENST00000558157 ADAMTSL5Q6ZMM2 481 aa8.81□□□□□ -1
USP3-206ENST00000558157 FAM222BQ8WU58 562 aa8.81□□□□□ -1
USP3-206ENST00000558157 ZNF747Q9BV97 191 aa8.81□□□□□ -1
USP3-206ENST00000558157 TEX50A0A1B0GTY4 177 aa8.81□□□□□ -1
USP3-206ENST00000558157 CCL2P13500 99 aa8.81□□□□□ -1
USP3-206ENST00000558157 CRYBA4P53673 196 aa8.81□□□□□ -1
USP3-206ENST00000558157 C1orf162Q8NEQ5 155 aaPredicted RBP8.81□□□□□ -1
USP3-206ENST00000558157 BLNKQ8WV28 456 aa8.81□□□□□ -1
USP3-206ENST00000558157 VGLL1Q99990 258 aa8.81□□□□□ -1
USP3-206ENST00000558157 RPP21Q9H633 154 aaKnown RBP8.81□□□□□ -1
USP3-206ENST00000558157 ENY2Q9NPA8 101 aa8.81□□□□□ -1
USP3-206ENST00000558157 THYN1Q9P016 225 aa8.81□□□□□ -1
USP3-206ENST00000558157 TSSC4Q9Y5U2 329 aaPredicted RBP8.81□□□□□ -1
USP3-206ENST00000558157 C15orf61A6NNL5 157 aa8.8□□□□□ -1
USP3-206ENST00000558157 VWC2LB2RUY7 222 aa8.8□□□□□ -1
USP3-206ENST00000558157 SMIM13P0DJ93 91 aa8.8□□□□□ -1
USP3-206ENST00000558157 FOXA3P55318 350 aaPredicted RBP8.8□□□□□ -1
USP3-206ENST00000558157 MEF2CQ06413 473 aaPredicted RBP8.8□□□□□ -1
USP3-206ENST00000558157 NEU4Q8WWR8 484 aaPredicted RBP8.8□□□□□ -1
USP3-206ENST00000558157 PRSS22Q9GZN4 317 aa8.8□□□□□ -1
USP3-206ENST00000558157 FOXA2Q9Y261 457 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms