RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 HOXB4P17483 251 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-229ENST00000557348 ZFP36P26651 326 aaKnown RBP10.13□□□□□ -0.79
SHMT2-229ENST00000557348 RHOBP62745 196 aa10.13□□□□□ -0.79
SHMT2-229ENST00000557348 OR5I1Q13606 314 aa10.13□□□□□ -0.79
SHMT2-229ENST00000557348 PLGLAQ15195 96 aa10.13□□□□□ -0.79
SHMT2-229ENST00000557348 TNXAQ16473 311 aa10.13□□□□□ -0.79
SHMT2-229ENST00000557348 HCP5Q6MZN7 132 aa10.13□□□□□ -0.79
SHMT2-229ENST00000557348 RASL11AQ6T310 242 aa10.13□□□□□ -0.79
SHMT2-229ENST00000557348 SIGLECL1Q8N7X8 197 aa10.13□□□□□ -0.79
SHMT2-229ENST00000557348 NBR2O15453 112 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 NDUFA3O95167 84 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 IGKV1D-33P01593 117 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 IGKV1-33P01594 117 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 OR5G3P0C626 314 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 MYOD1P15172 320 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 SUMO1P63165 101 aaKnown RBP10.12□□□□□ -0.79
SHMT2-229ENST00000557348 PVRIGQ6DKI7 326 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 Q6ZWC4 215 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 OR10W1Q8NGF6 305 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 C10orf105Q8TEF2 133 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 CFHR4Q92496 578 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 C11orf52Q96A22 123 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 SLC25A22Q9H936 323 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 DOCK11Q5JSL3 2073 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 CXorf1O96002 111 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 AREGP15514 252 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 ADMP35318 185 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 CTRLP40313 264 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 ATP5J2P56134 94 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 WT1-ASQ06250 92 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 EBI3Q14213 229 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 MMDQ15546 238 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 FAM162BQ5T6X4 162 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 DMRTA1Q5VZB9 504 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 ADGRG4Q8IZF6 3080 aa10.12□□□□□ -0.79
SHMT2-229ENST00000557348 MYO18BQ8IUG5 2567 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 DOPEY1Q5JWR5 2465 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 IGLC7A0M8Q6 106 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 CGB1A6NKQ9 187 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 ZNF253O75346 499 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 GPX1P07203 203 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 PRR20EP86478 221 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 PRR20CP86479 221 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 PRR20DP86480 221 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 PRR20BP86481 221 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 PRR20AP86496 221 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 CST9LP1Q5W188 147 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 TMEM256Q8N2U0 113 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 STPG3Q8N7X2 389 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 HSPB9Q9BQS6 159 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 SAMD10Q9BYL1 202 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 DNAJC4Q9NNZ3 241 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 C1RLQ9NZP8 487 aa10.11□□□□□ -0.79
SHMT2-229ENST00000557348 VWC2LB2RUY7 222 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 GNB1P62873 340 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 ZNF90Q03938 601 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 KLRD1Q13241 179 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 UBE2V1Q13404 147 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 MRGPRG-AS1Q2M3A8 158 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 MIC13Q5XKP0 118 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 BAGE3Q86Y29 109 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 BAGE2Q86Y30 109 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 ZNF738Q8NE65 137 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 SRSF12Q8WXF0 261 aaKnown RBP10.1□□□□□ -0.79
SHMT2-229ENST00000557348 RITA1Q96K30 269 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 UHRF2Q96PU4 802 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 TPSG1Q9NRR2 321 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 MRPL27Q9P0M9 148 aaKnown RBP10.1□□□□□ -0.79
SHMT2-229ENST00000557348 HILPDAQ9Y5L2 63 aa10.1□□□□□ -0.79
SHMT2-229ENST00000557348 FAM106CPP0CH98 169 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 STAG3L2P0CL84 134 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 STAG3L3P0CL85 134 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 DLX1P56177 255 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 TAS2R45P59539 299 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 UBE2G2P60604 165 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 HES1Q14469 280 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 C10orf55Q5SWW7 151 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 THAP8Q8NA92 274 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 EAF1Q96JC9 268 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-229ENST00000557348 MRPL32Q9BYC8 188 aaKnown RBP10.09□□□□□ -0.79
SHMT2-229ENST00000557348 MRPL18Q9H0U6 180 aaKnown RBP10.09□□□□□ -0.79
SHMT2-229ENST00000557348 FBXL15Q9H469 300 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 LAMTOR2Q9Y2Q5 125 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 F11RQ9Y624 299 aaKnown RBP10.09□□□□□ -0.79
SHMT2-229ENST00000557348 UBR5O95071 2799 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-229ENST00000557348 CNIH1O95406 144 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 HLA-DQA1P01909 254 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 PPBPP02775 128 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 SLC25A16P16260 332 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 C5orf64Q2M2E5 130 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 RPEL1Q2QD12 228 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 LHFPL4Q7Z7J7 247 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 OR1L4Q8NGR5 311 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 GATAD1Q8WUU5 269 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 SSMEM1Q8WWF3 244 aa10.09□□□□□ -0.79
SHMT2-229ENST00000557348 DIRC3C9JPN6 131 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 E7EUB6 86 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 SERF1AO75920 110 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 CRYGCP07315 174 aa10.08□□□□□ -0.8
SHMT2-229ENST00000557348 IGLC2P0DOY2 106 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms