RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	KRTAP27-1	Q3LI81	207 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	SCGB3A1	Q96QR1	104 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	LOC105371242	A0A075B767	164 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGLC7	A0M8Q6	106 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005		K7ERJ3	54 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGLV2-14	P01704	120 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGLL1	P15814	213 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	DLX1	P56177	255 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	CKS1B	P61024	79 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	ERVK11-1	P61568	191 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	ADAMTSL5	Q6ZMM2	481 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	C17orf82	Q86X59	251 aa	Predicted RBP	4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR10J6P	Q8NGY7	276 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	OSR1	Q8TAX0	266 aa	Predicted RBP	4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	PRR7	Q8TB68	274 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	PSG8	Q9UQ74	426 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	LTBP2	Q14767	1821 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	KMT2E	Q8IZD2	1858 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM131	Q92545	1883 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGKV3D-15	A0A087WSY6	115 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	C19orf67	A6NJJ6	358 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	HOXA3	O43365	443 aa	Predicted RBP	4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGKV3-15	P01624	115 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	CEACAM8	P31997	349 aa	Predicted RBP	4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	PAX2	Q02962	417 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	BSPH1	Q075Z2	132 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	TTC32	Q5I0X7	151 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	RAB1B	Q9H0U4	201 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005		A0A1B0GW15	77 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005		H0YJW9	148 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	YPEL3	P61236	119 aa	Predicted RBP	4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	BVES-AS1	Q5T3Y7	98 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM200B	Q69YZ2	307 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	FAM71F2	Q6NXP2	309 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005		Q86TA4	180 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	FAM90A1	Q86YD7	464 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	FAM168A	Q92567	244 aa		4.07	□□□□□ -1.76
SYNE2-223	ENST00000557005	GGTLC3	B5MD39	225 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005		J3QW42	95 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	DPM2	O94777	84 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	TCRA	P04437	139 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	FRMD6-AS1	P0C7T7	363 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	CNTFR	P26992	372 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	FOXC1	Q12948	553 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZCCHC24	Q8N2G6	241 aa	Known RBP	4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	PRDM6	Q9NQX0	595 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	TSPAN13	O95857	204 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	FTH1P19	P0C7X4	201 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	CFHR2	P36980	270 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	EMP1	P54849	157 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	SEC11A	P67812	179 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	ERCC8	Q13216	396 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	FDCSP	Q8NFU4	85 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	PHLDA3	Q9Y5J5	127 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	LINC00312	Q9Y6C7	94 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGHV3-64	A0A075B6Q5	118 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	TRAV8-1	A0A0A6YYK1	113 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	CRX	O43186	299 aa	Predicted RBP	4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	ATP5G2	Q06055	141 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	PSG3	Q16557	428 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	BCL6B	Q8N143	479 aa	Predicted RBP	4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	RNASE8	Q8TDE3	154 aa	Known RBP	4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	CACNG8	Q8WXS5	425 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	ANAPC13	Q9BS18	74 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	TMEM213	A2RRL7	107 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005		M0R381	172 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	TOMM40	O96008	361 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	FAM74A4	Q5TZK3	123 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	WFDC12	Q8WWY7	111 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	ATG2B	Q96BY7	2078 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	C9orf172	C9J069	976 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005		K7EP34	96 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	SMAD7	O15105	426 aa	Known RBP	4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	CD5L	O43866	347 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGHV1-46	P01743	117 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGKV1-16	P04430	117 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	RNASE2	P10153	161 aa	Known RBP	4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	SPRN	Q5BIV9	151 aa		4.06	□□□□□ -1.76
SYNE2-223	ENST00000557005	C9orf118	A6NHY6	69 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	SNCG	O76070	127 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	CDKN1B	P46527	198 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	NPC2	P61916	151 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	CRIP3	Q6Q6R5	217 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	CLEC19A	Q6UXS0	136 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	GLMP	Q8WWB7	406 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	CHAC1	Q9BUX1	264 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	RAX	Q9Y2V3	346 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	MDC1	Q14676	2089 aa	Known RBP	4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	LY6G6E	A0A0G2JKS1	128 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	ETV2	O00321	342 aa	Predicted RBP	4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	VDAC2	P45880	294 aa	Predicted RBP	4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	ZNF56	Q15929	161 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	LINC00173	Q6ZV60	143 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	MTURN	Q8N3F0	131 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	TTC9C	Q8N5M4	171 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	OR2K2	Q8NGT1	345 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005	IGF2BP2-AS1	Q96M15	143 aa		4.05	□□□□□ -1.76
SYNE2-223	ENST00000557005		U3KQA8	63 aa		4.05	□□□□□ -1.76

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