RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ARRDC1Q8N5I2 433 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 FAM24BQ8N5W8 94 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 PINX1Q96BK5 328 aaKnown RBP7.23□□□□□ -1.25
SCFD1-220ENST00000556486 SCRT1Q9BWW7 348 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 KRTAP4-7Q9BYR0 210 aa7.23□□□□□ -1.25
SCFD1-220ENST00000556486 SMIM31A0A1B0GVY4 71 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 A0A1W2PS18 150 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 K7EQG2 157 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 CLN5O75503 358 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 B3GALNT1O75752 331 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 ATG12O94817 140 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 RNASE2P10153 161 aaKnown RBP7.22□□□□□ -1.25
SCFD1-220ENST00000556486 MIFP14174 115 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 NPPCP23582 126 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 HLA-DMBP28068 263 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 SUB1P53999 127 aaKnown RBP eCLIP7.22□□□□□ -1.25
SCFD1-220ENST00000556486 MORN3Q6PF18 240 aaPredicted RBP7.22□□□□□ -1.25
SCFD1-220ENST00000556486 OR4X1Q8NH49 305 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 DCANP1Q8TF63 244 aa7.22□□□□□ -1.25
SCFD1-220ENST00000556486 A0A087WXM4 84 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 KRTAP9-7A8MTY7 169 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 DNASE2O00115 360 aaPredicted RBP7.21□□□□□ -1.26
SCFD1-220ENST00000556486 IGKV1-17P01599 117 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 RBMY1A1P0DJD3 496 aaKnown RBP7.21□□□□□ -1.26
SCFD1-220ENST00000556486 RBMY1CP0DJD4 496 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 UCP1P25874 307 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 PIGPP57054 158 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 FOXI1Q12951 378 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 RBMY1FQ15415 496 aaKnown RBP7.21□□□□□ -1.26
SCFD1-220ENST00000556486 IZUMO4Q1ZYL8 232 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 LEMD1Q68G75 181 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 STHQ8IWL8 128 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 SLC35G3Q8N808 338 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 CSNK1G2-AS1Q8NCQ2 148 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 METTL26Q96S19 204 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 TP53RKQ96S44 253 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 FNDC4Q9H6D8 234 aaPredicted RBP7.21□□□□□ -1.26
SCFD1-220ENST00000556486 VCX3AQ9NNX9 186 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 MRPL36Q9P0J6 103 aaKnown RBP7.21□□□□□ -1.26
SCFD1-220ENST00000556486 COMMD3Q9UBI1 195 aa7.21□□□□□ -1.26
SCFD1-220ENST00000556486 AGRNO00468 2067 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 TRAV30A0A087WSZ9 112 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 IGHV4-28A0A0C4DH34 117 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 RHODO00212 210 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 SCGB2A1O75556 95 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 ELK1P19419 428 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 P2RY1P47900 373 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 AKR1C2P52895 323 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 LSM3P62310 102 aaKnown RBP7.2□□□□□ -1.26
SCFD1-220ENST00000556486 RNASE10Q5GAN6 216 aaKnown RBP7.2□□□□□ -1.26
SCFD1-220ENST00000556486 SNX29P2Q8IUI4 249 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 FAM219AQ8IW50 185 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 POM121L12Q8N7R1 296 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 OR52E5Q8NH55 327 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 MTFP1Q9UDX5 166 aa7.2□□□□□ -1.26
SCFD1-220ENST00000556486 APOBP04114 4563 aaKnown RBP7.19□□□□□ -1.26
SCFD1-220ENST00000556486 IGHV3-66A0A0C4DH42 116 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 C3orf85A0A1B0GTC6 90 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 VCYO14598 125 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 TNFAIP8O95379 198 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 IFNA17P01571 189 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 CD74P04233 296 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 C4BPBP20851 252 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 ETV6P41212 452 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 EIF2B2P49770 351 aaKnown RBP7.19□□□□□ -1.26
SCFD1-220ENST00000556486 SPCS3P61009 180 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 NCS1P62166 190 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 SPINK9Q5DT21 86 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 PQLC2Q6ZP29 291 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 TERB2Q8NHR7 220 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 PDCD10Q9BUL8 212 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 RNF126Q9BV68 326 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 KLK11Q9UBX7 282 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 RABAC1Q9UI14 185 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 LRP1BQ9NZR2 4599 aa7.19□□□□□ -1.26
SCFD1-220ENST00000556486 TRAV10A0A0B4J240 114 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 A0A0G2JRQ6 117 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 RPS10-NUDT3A0A1W2PQS6 291 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 HELTA6NFD8 242 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 C16orf90A8MZG2 172 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 HPGDSO60760 199 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 CDS2O95674 445 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 AMBPP02760 352 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 CD3DP04234 171 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 ZNF688P0C7X2 276 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 IGLC1P0CG04 106 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 SLC25A4P12235 298 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 PGAM2P15259 253 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 OPRK1P41145 380 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 HTR2BP41595 481 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 HOXA1P49639 335 aaPredicted RBP7.18□□□□□ -1.26
SCFD1-220ENST00000556486 AP2S1P53680 142 aaPredicted RBP7.18□□□□□ -1.26
SCFD1-220ENST00000556486 YPEL3P61236 119 aaPredicted RBP7.18□□□□□ -1.26
SCFD1-220ENST00000556486 CCDC71LQ8N9Z2 235 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 STXBP6Q8NFX7 210 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 ZFAND1Q8TCF1 268 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 RNASEH2CQ8TDP1 164 aaKnown RBP7.18□□□□□ -1.26
SCFD1-220ENST00000556486 C15orf40Q8WUR7 153 aa7.18□□□□□ -1.26
SCFD1-220ENST00000556486 NARS2Q96I59 477 aaKnown RBP7.18□□□□□ -1.26
SCFD1-220ENST00000556486 FUNDC2Q9BWH2 189 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 168.2 ms