RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 EXPH5Q8NEV8 1989 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 A0A087X0T9 212 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 TRAV1-1A0A0B4J248 108 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 TRAV4A0A0B4J268 109 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 OR1I1O60431 355 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 OR4E1P0C645 316 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 BAALC-AS2P0C853 105 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 BRS3P32247 399 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 TAS2R41P59536 307 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 GNG5P63218 68 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 PDE6HQ13956 83 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 GOLT1AQ6ZVE7 132 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 LCA10Q71F78 164 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 ARHGEF28Q8N1W1 1705 aaKnown RBP0.85□□□□□ -2.27
SCFD1-217ENST00000555953 C15orf53Q8NAA6 179 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 NEK7Q8TDX7 302 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 MIA2Q96PC5 1412 aa0.85□□□□□ -2.27
SCFD1-217ENST00000555953 DLG5Q8TDM6 1919 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 POLEQ07864 2286 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 TRAV3A0A0B4J244 114 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 C7orf71A4D174 169 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 C2orf70A6NJV1 201 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 B4DSR2 109 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 HMGB3O15347 200 aaKnown RBP0.84□□□□□ -2.27
SCFD1-217ENST00000555953 FABP1P07148 127 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 VBP1P61758 197 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 B2MP61769 119 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 RHOBP62745 196 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 RHOGP84095 191 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 PLCXD2Q0VAA5 305 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 KRR1Q13601 381 aaKnown RBP0.84□□□□□ -2.27
SCFD1-217ENST00000555953 TMED2Q15363 201 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 TSNQ15631 228 aaKnown RBP0.84□□□□□ -2.27
SCFD1-217ENST00000555953 LYRM7Q5U5X0 104 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 Q6Q795 121 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 LINC00311Q8N616 119 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 C3orf56Q8N813 242 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 OR11H6Q8NGC7 330 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 OR13D1Q8NGV5 346 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 OR10J5Q8NHC4 309 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 GNPDA2Q8TDQ7 276 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 FAM172AQ8WUF8 416 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 CARD19Q96LW7 228 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 HIST1H2BLQ99880 126 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 PRRT1Q99946 306 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 TMEM133Q9H2Q1 129 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 PARVBQ9HBI1 364 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 IL20Q9NYY1 176 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 HS3ST2Q9Y278 367 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 UFC1Q9Y3C8 167 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 ARL5AQ9Y689 179 aa0.84□□□□□ -2.27
SCFD1-217ENST00000555953 EML6Q6ZMW3 1958 aa0.84□□□□□ -2.28
SCFD1-217ENST00000555953 CEP192Q8TEP8 1941 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 RIMBP3CA6NJZ7 1639 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 RIMBP3BA6NNM3 1639 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 RIMBP3Q9UFD9 1639 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 DIDO1Q9BTC0 2240 aaKnown RBP0.83□□□□□ -2.28
SCFD1-217ENST00000555953 CYB5BO43169 146 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 PROSCO94903 275 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 UBL3O95164 117 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 NEFHP12036 1026 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 ERP29P30040 261 aaKnown RBP0.83□□□□□ -2.28
SCFD1-217ENST00000555953 RNASE4P34096 147 aaKnown RBP0.83□□□□□ -2.28
SCFD1-217ENST00000555953 GLRXP35754 106 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 SSR2P43308 183 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 INSL3P51460 131 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 PIGPP57054 158 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 HSPE1P61604 102 aaKnown RBP0.83□□□□□ -2.28
SCFD1-217ENST00000555953 GNG3P63215 75 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 RPL19P84098 196 aaKnown RBP0.83□□□□□ -2.28
SCFD1-217ENST00000555953 SNCBQ16143 134 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 OR2T10Q8NGZ9 312 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 PRNDQ9UKY0 176 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 SLC35A3Q9Y2D2 325 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 SNURFQ9Y675 71 aa0.83□□□□□ -2.28
SCFD1-217ENST00000555953 ROS1P08922 2347 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 TECTAO75443 2155 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 TRBV19A0A075B6N1 114 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 A0A087WX48 190 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 IGKV2D-26A0A0A0MRZ7 120 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 TRAV12-1A0A0B4J245 112 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 PGRMC1O00264 195 aaKnown RBP0.82□□□□□ -2.28
SCFD1-217ENST00000555953 GEMIN2O14893 280 aaKnown RBP0.82□□□□□ -2.28
SCFD1-217ENST00000555953 SULT1B1O43704 296 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 HYPMO75409 117 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 CSN2P05814 226 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 MGST1P10620 155 aaKnown RBP0.82□□□□□ -2.28
SCFD1-217ENST00000555953 KRTAP10-4P60372 401 aaPredicted RBP0.82□□□□□ -2.28
SCFD1-217ENST00000555953 RAB4BP61018 213 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 NCALDP61601 193 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 GINS3Q9BRX5 216 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 STOML2Q9UJZ1 356 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 ADGRB2O60241 1585 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 EIF3AQ14152 1382 aaKnown RBP0.82□□□□□ -2.28
SCFD1-217ENST00000555953 TENM3Q9P273 2699 aa0.82□□□□□ -2.28
SCFD1-217ENST00000555953 MCM3APO60318 1980 aa0.81□□□□□ -2.28
SCFD1-217ENST00000555953 NCAPD3P42695 1498 aa0.81□□□□□ -2.28
SCFD1-217ENST00000555953 ODAMA1E959 279 aa0.81□□□□□ -2.28
SCFD1-217ENST00000555953 M0R378 163 aa0.81□□□□□ -2.28
SCFD1-217ENST00000555953 LYZL6O75951 148 aa0.81□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms