RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 LRRC9Q6ZRR7 1453 aa2.45□□□□□ -2.02
LINC00643-204ENST00000555934 ZNF609O15014 1411 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 FMN1Q68DA7 1419 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 SCN10AQ9Y5Y9 1956 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 CC2D2AQ9P2K1 1620 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 J3QR89 54 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 CORTO00230 105 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 UCHL1P09936 223 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 OPRM1P35372 400 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 FUSP35637 526 aaKnown RBP eCLIP2.44□□□□□ -2.02
LINC00643-204ENST00000555934 HBA1P69905 142 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 OR52R1Q8NGF1 315 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 OR4C16Q8NGL9 310 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 OR4K13Q8NH42 304 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 SGMS2Q8NHU3 365 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 FNDC9Q8TBE3 224 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 ZNF418Q8TF45 676 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-204ENST00000555934 RAB2BQ8WUD1 216 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 TMEM106AQ96A25 262 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 SLAMF6Q96DU3 332 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 BORCS8Q96FH0 119 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 GPX7Q96SL4 187 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-204ENST00000555934 SLC25A21Q9BQT8 299 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-204ENST00000555934 TUBA4BQ9H853 241 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 TAF9BQ9HBM6 251 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 NEO1Q92859 1461 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 CUL7Q14999 1698 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 KIF21AQ7Z4S6 1674 aa2.44□□□□□ -2.02
LINC00643-204ENST00000555934 HFM1A2PYH4 1435 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 GABARAPH6UMI1 98 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 J3QQQ9 107 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 ZNF705DP0CH99 300 aaPredicted RBP2.43□□□□□ -2.02
LINC00643-204ENST00000555934 CSRP1P21291 193 aaKnown RBP2.43□□□□□ -2.02
LINC00643-204ENST00000555934 FGF7P21781 194 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 FKBP2P26885 142 aaKnown RBP2.43□□□□□ -2.02
LINC00643-204ENST00000555934 PKIAP61925 76 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 HOXC5Q00444 222 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 EIF3IQ13347 325 aaKnown RBP2.43□□□□□ -2.02
LINC00643-204ENST00000555934 RTL8BQ17RB0 113 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 FAM229BQ4G0N7 80 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 Q5XG85 94 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 KTN1-AS1Q86SY8 53 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 LHFPL1Q86WI0 220 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 PRR15Q8IV56 129 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 TCTEX1D1Q8N7M0 179 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 TOMM6Q96B49 74 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 C2orf50Q96LR7 162 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 AP1S3Q96PC3 154 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 AICDAQ9GZX7 198 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 CST9LQ9H4G1 147 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 ZFP30Q9Y2G7 519 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 MRPS16Q9Y3D3 137 aaKnown RBP2.43□□□□□ -2.02
LINC00643-204ENST00000555934 ZNF106Q9H2Y7 1883 aaKnown RBP2.43□□□□□ -2.02
LINC00643-204ENST00000555934 OTOFQ9HC10 1997 aa2.43□□□□□ -2.02
LINC00643-204ENST00000555934 CASKIN1Q8WXD9 1431 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 UACAQ9BZF9 1416 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 ARHGEF11O15085 1522 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 ABCA10Q8WWZ4 1543 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 PHLPP1O60346 1717 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 KIF13BQ9NQT8 1826 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 MYO9BQ13459 2157 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 TTC37Q6PGP7 1564 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 NCOA2Q15596 1464 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 TRAV38-1A0A0B4J264 116 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 TRAV41A0A0B4J266 112 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 LINC00862A6NCI5 91 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 PGLYRP1O75594 196 aaPredicted RBP2.42□□□□□ -2.02
LINC00643-204ENST00000555934 IFNA17P01571 189 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 TRGC2P03986 189 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 P0DMU3 169 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 FAM231AP0DMU4 169 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 FAM231CP0DMU5 169 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 TAS2R20P59543 309 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 COPZ1P61923 177 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 VMA21Q3ZAQ7 101 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 TEX261Q6UWH6 196 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 C8orf59Q8N0T1 100 aaPredicted RBP2.42□□□□□ -2.02
LINC00643-204ENST00000555934 ZFAND2AQ8N6M9 145 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 ACBD7Q8N6N7 88 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 OR51A4Q8NGJ6 313 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 TERB2Q8NHR7 220 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 PSMG3Q9BT73 122 aaPredicted RBP2.42□□□□□ -2.02
LINC00643-204ENST00000555934 NAT8Q9UHE5 227 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 FBN1P35555 2871 aaKnown RBP2.42□□□□□ -2.02
LINC00643-204ENST00000555934 EHBP1L1Q8N3D4 1523 aa2.42□□□□□ -2.02
LINC00643-204ENST00000555934 COL18A1P39060 1754 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 TCOF1Q13428 1488 aaKnown RBP2.41□□□□□ -2.02
LINC00643-204ENST00000555934 LOC107984640A0A0U1RRK4 108 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 ARRDC5A6NEK1 342 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 TLCD2A6NGC4 264 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 LY6LH3BQJ8 138 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 M0R143 59 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 UBE2L6O14933 153 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 PLA2G10O15496 165 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 LYZL6O75951 148 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 MT-ND4LP03901 98 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 GPX1P07203 203 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 SRP19P09132 144 aaKnown RBP2.41□□□□□ -2.02
LINC00643-204ENST00000555934 PAEPP09466 180 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 LINC00694P0DN24 101 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms